CATH Domain: 1vmeB01 XML data for domain: 1vmeB01

Molscript image for 1vmeB01
1vmeB01
PDB coordinates for domain 1vmeB01

PDB 1vme, Chain B, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.60 4-Layer Sandwich
3.60.15 Metallo-beta-lactamase; Chain A
3.60.15.10 Metallo-beta-lactamase, chain A Gene3D
3.60.15.10.7
3.60.15.10.7.1
3.60.15.10.7.1.1
3.60.15.10.7.1.1.1
3.60.15.10.7.1.1.1.1

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Segment boundaries for domain 1vmeB01

Chopping figure for domain 1vmeB01
DomainStart PDB ResidueStop PDB Residue
1vmeB01 -1 249
1vmeB02 250 398

Structural Neighbourhood (7 entries)

There are 7 matching structural neighberhood comparisons for CATH ID 3.60.15.10.7.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 7 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1e5dA02 89.81 Desulfovibrio gigasRubredoxin-oxygen oxidoreductase 3.60.15.10 247 26 95 1.47 1.54
2q9uB01 88.90 Giardia intestinalisA-type flavoprotein 3.60.15.10 246 24 96 2.20 2.28
1smlA00 80.60 Stenotrophomonas maltophiliaMetallo-beta-lactamase L1 3.60.15.10 266 14 73 2.72 3.69
1znbB00 80.33 Bacteroides fragilisBeta-lactamase type II 3.60.15.10 230 16 83 3.19 3.80
1jjeB00 79.89 Pseudomonas aeruginosaBeta-lactamase 3.60.15.10 221 16 81 3.13 3.84
1m2xA00 79.61 Elizabethkingia meningosepticaCarbapenem-hydrolyzing beta-lactamase blaB-1 3.60.15.10 219 14 82 2.90 3.51
2p97A00 79.07 Anabaena variabilis ATCC 29413Putative uncharacterized protein 3.60.15.10 197 17 77 2.69 3.49
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Displaying entries 1 to 7 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1vmeB01
HHPKIWTERIFDDPEIYVLRIDDDRIRYFEAVWEIPEGISYNAYLVKLNGANVLIDGWKGNYAKEFIDALSKIVDPKEIT
HIIVNHTEPDHSGSLPATLKTIGHDVEIIASNFGKRLLEGFYGIKDVTVVKDGEEREIGGKKFKFVTPWLHWPDTVTYLD
GILFSCDVGGGYLLPEILDDSNESVVERYLPHVTKYIVTVIGHYKNYILEGAEKLSSLKIKALLPGHGLIWKKDPQRLLN
HYVSVAKG
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1vmeB01
MGSDKIHHHHHHXPKIWTERIFDDPEIYVLRIDDDRIRYFEAVWEIPEGISYNAYLVKLNGANVLIDGWKGNYAKEFIDA
LSKIVDPKEITHIIVNHTEPDHSGSLPATLKTIGHDVEIIASNFGKRLLEGFYGIKDVTVVKDGEEREIGGKKFKFVXTP
WLHWPDTXVTYLDGILFSCDVGGGYLLPEILDDSNESVVERYLPHVTKYIVTVIGHYKNYILEGAEKLSSLKIKALLPGH
GLIWKKDPQRLLNHYVSVAKG
BLAST against CATH

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Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 19:59

Assigning to "3.60.15.10" based on similarity with "1vmeA01" (NWSI: 98.8505747126437, NWO: 100, SPS: 98.58, SPO: 98, RMSD: 0.38)

Flow stage update by auto on 28 Apr 2006 17:50

NW result present for Domain "1vmeB01"

Flow stage update by auto on 28 Apr 2006 17:46

All required files are present for Domain "1vmeB01"

Flow stage update by auto on 27 Apr 2006 17:31

Beginning processing for Domain "1vmeB01"

Insertion by auto on 09 Mar 2006 17:28

Final ChopClose added based on similarity with "1vmeA" [LEE: 0, LME: 0, MR: 2, LG: 2, SS: 97.72, SI: 98.2926829268293, SO: 100]