CATH Domain: 1vmeA02 XML data for domain: 1vmeA02

Molscript image for 1vmeA02
1vmeA02
PDB coordinates for domain 1vmeA02

PDB 1vme, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.360 Gene3D
3.40.50.360.19
3.40.50.360.19.1
3.40.50.360.19.1.1
3.40.50.360.19.1.1.1
3.40.50.360.19.1.1.1.1

Segment boundaries for domain 1vmeA02

Chopping figure for domain 1vmeA02
DomainStart PDB ResidueStop PDB Residue
1vmeA01 -3 249
1vmeA02 250 398

Structural Neighbourhood (49 entries)

There are 49 matching structural neighberhood comparisons for CATH ID 3.40.50.360.19.1.1.1.1 (SIMAX score < 5)

Displaying entries 1 to 49 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1e5dA01 87.81 Desulfovibrio gigasRubredoxin-oxygen oxidoreductase 3.40.50.360 143 23 93 2.43 2.59
3d7nA00 81.35 Agrobacterium tumefaciens str. C58Flavodoxin, WrbA-like protein 3.40.50.360 153 11 88 3.36 3.81
1bvyF00 80.27 Bacillus megateriumBifunctional P-450/NADPH-P450 reductase 3.40.50.360 152 17 87 3.43 3.92
2qv0A00 80.21 Protein mrkEKlebsiella pneumoniae 3.40.50.2300 122 9 78 3.30 4.21
1ny5A01 79.88 Transcriptional regulator (NtrC family)Two-component system, NtrC family, response regulatorAquifex aeolicus 3.40.50.2300 136 14 80 3.47 4.31
3gl9B00 79.68 Thermotoga maritimaResponse regulatorTwo-component system, unclassified family, response regulatorProtein binding 3.40.50.2300 118 15 79 3.94 4.93
1gudA01 79.30 ABC transportersMembraneD-allose transport system substrate-binding proteinD-allose-binding periplasmic proteinEscherichia coli K-12 3.40.50.2300 139 8 83 4.01 4.81
2driA01 79.21 Bacterial chemotaxisABC transportersD-ribose-binding periplasmic proteinRibose transport system substrate-binding proteinMembrane 3.40.50.2300 125 9 78 3.52 4.49
1mb3A00 79.13 Caulobacter vibrioidesTwo-component systemTwo-component system, cell cycle response regulator DivKPolar differentiation response regulatorCell cycle - Caulobacter 3.40.50.2300 115 13 74 3.22 4.33
2qvgA00 79.10 Two component response regulator[EC:2.7.3.-]Legionella pneumophila subsp. pneumophila str. Philadelphia 1 3.40.50.2300 126 10 79 3.40 4.29
3gt7A00 79.04 Sensor proteinSyntrophus aciditrophicus SB 3.40.50.2300 131 14 79 3.29 4.16
1kjnA00 79.00 Methanothermobacter thermautotrophicus str. Delta HConserved protein 3.40.50.10160 148 13 85 3.53 4.11
1zgzA00 78.90 Two-component systemTorCAD operon transcriptional regulatory protein torRTwo-component system, OmpR family, torCAD operon response regulator TorRProtein bindingEscherichia coli K-12 3.40.50.2300 118 7 76 3.41 4.46
1w25B02 78.90 Two-component systemCell cycle - CaulobacterCaulobacter vibrioidesIdentical protein bindingTwo-component system, cell cycle response regulator 3.40.50.2300 143 10 81 4.06 5.00
1dbqA01 78.75 LacI family transcriptional regulator, purine nucleotide synthesis repressorHTH-type transcriptional repressor purREscherichia coli K-12 3.40.50.2300 134 9 81 3.89 4.79
3cwcB01 78.74 Glycerate kinase [EC:2.7.1.31]Glycerolipid metabolismSalmonella enterica subsp. enterica serovar TyphimuriumPutative glycerate kinase 2Glycine, serine and threonine metabolism 3.40.50.10350 137 12 81 3.84 4.69
1k68A00 78.63 Tolypothrix sp. PCC 7601Response regulator 3.40.50.2300 139 8 84 3.90 4.60
3cnbA00 78.53 DNA-binding response regulator, merR familyColwellia psychrerythraea 34H 3.40.50.2300 124 5 78 3.69 4.70
2b4aA00 78.51 BH3024 proteinBacillus halodurans 3.40.50.2300 116 11 77 3.06 3.97
2fvyA01 78.34 Bacterial chemotaxisABC transportersMethyl-galactoside transport system substrate-binding proteinD-galactose-binding periplasmic proteinEscherichia coli K-12 3.40.50.2300 147 9 82 3.90 4.70
2r25B00 78.32 MAPK signaling pathway - yeastResponse to hydrogen peroxideProtein bindingOsmosensor activityOsomolarity two-component system, sensor histidine kinase SLN1 [EC:2.7.13.3] 3.40.50.2300 131 11 80 3.76 4.67
1srrC00 78.32 Sporulation initiation phosphotransferase FTwo-component system, response regulator, stage 0 sporulation protein FBacillus subtilisTwo-component system 3.40.50.2300 121 12 79 3.47 4.38
2g76A01 78.29 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95]D-3-phosphoglycerate dehydrogenaseGlycine, serine and threonine metabolismBrain developmentMetabolic pathways 3.40.50.720 112 16 72 3.26 4.47
1ys7A01 78.23 Transcriptional regulatory protein prrAMycobacterium tuberculosis 3.40.50.2300 122 13 78 3.62 4.61
1gtzA00 78.19 Phenylalanine, tyrosine and tryptophan biosynthesis3-dehydroquinate dehydratase II [EC:4.2.1.10]Streptomyces coelicolor3-dehydroquinate dehydrataseMetabolic pathways 3.40.50.9100 149 6 85 4.18 4.87
1t3gB00 78.10 Plasma membraneInterleukin 1 receptor accessory protein-likeHomo sapiensNegative regulation of exocytosisProtein binding 3.40.50.10140 146 15 91 4.49 4.89
2zayA00 78.09 Response regulator receiver proteinDesulfuromonas acetoxidans DSM 684 3.40.50.2300 123 10 78 3.58 4.56
3b2nA00 77.94 Similar to two-component response regulatorStaphylococcus aureus subsp. aureus Mu50 3.40.50.2300 119 13 77 3.29 4.23
2jbaA00 77.84 Two-component systemPhosphate regulon transcriptional regulatory protein phoBTwo-component system, OmpR family, phosphate regulon response regulator PhoBProtein bindingEscherichia coli K-12 3.40.50.2300 125 13 77 3.34 4.29
1qkkA00 77.83 Sinorhizobium melilotiTwo-component systemTwo-component system, NtrC family, C4-dicarboxylate transport response regulator DctDC4-dicarboxylate transport transcriptional regulatory protein dctD 3.40.50.2300 139 13 77 3.37 4.33
2qzjA00 77.82 Two-component response regulatorClostridium difficile 630 3.40.50.2300 119 13 79 3.67 4.64
1dbwB00 77.67 Sinorhizobium melilotiTranscriptional regulatory protein fixJ 3.40.50.2300 125 16 79 3.81 4.81
3cz5B00 77.57 Two-component response regulator, LuxR familyAurantimonas manganoxydans SI85-9A1 3.40.50.2300 140 7 79 3.97 4.97
2dc1A01 77.51 Aspartate dehydrogenase [EC:1.4.1.21]Archaeoglobus fulgidusProbable L-aspartate dehydrogenaseNicotinate and nicotinamide metabolism 3.40.50.720 135 13 86 4.09 4.71
3d8uB01 77.41 Putative transcriptional regulatorVibrio parahaemolyticusLacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor 3.40.50.2300 119 9 75 3.39 4.48
3cu5B00 77.25 Clostridium phytofermentans ISDgTwo component transcriptional regulator, AraC family 3.40.50.2300 129 8 79 3.44 4.35
1gdhA01 77.18 Glycerate dehydrogenaseHyphomicrobium methylovorum 3.40.50.720 128 11 77 3.50 4.50
1a2oA01 77.11 Bacterial chemotaxisTwo-component systemChemotaxis response regulator protein-glutamate methylesteraseTwo-component system, chemotaxis family, response regulator CheB [EC:3.1.1.61]Salmonella enterica subsp. enterica serovar Typhimurium 3.40.50.2300 133 12 84 3.97 4.72
3brsA01 76.89 Ribose transport system substrate-binding proteinBacterial chemotaxisPeriplasmic binding protein/LacI transcriptional regulatorClostridium phytofermentans ISDgABC transporters 3.40.50.2300 136 11 81 3.76 4.63
1qo0D01 76.80 Pseudomonas aeruginosaAliphatic amidase regulator 3.40.50.2300 127 6 77 3.72 4.78
2qxyA00 76.74 Thermotoga maritimaResponse regulatorTwo-component system, unclassified family, response regulator 3.40.50.2300 118 11 79 3.89 4.91
1p2fA01 76.73 Thermotoga maritimaResponse regulatorTwo-component system, OmpR family, response regulator 3.40.50.2300 117 15 75 3.69 4.87
2qr3A00 76.43 Bacteroides fragilisTwo-component system response regulator 3.40.50.2300 119 10 81 3.85 4.74
2jk1A00 76.20 Hydrogenase transcriptional regulatory protein hupR1Rhodobacter capsulatus 3.40.50.2300 138 8 78 3.72 4.74
1z0sA01 76.10 Archaeoglobus fulgidusProbable inorganic polyphosphate/ATP-NAD kinaseNAD+ kinase [EC:2.7.1.23]Nicotinate and nicotinamide metabolismMetabolic pathways 3.40.50.10330 123 12 66 3.18 4.77
2qu7A01 75.99 Putative transcriptional regulatorStaphylococcus saprophyticus subsp. saprophyticus ATCC 15305 3.40.50.2300 129 7 78 3.87 4.93
3ff4A00 75.96 Cytophaga hutchinsonii ATCC 33406Putative uncharacterized protein 3.40.50.720 119 10 75 3.78 4.99
2rjnA00 75.83 Response regulator receiver:Metal-dependent phosphohydrolase, HD subdomainNeptuniibacter caesariensis 3.40.50.2300 135 12 81 3.86 4.75
3cneA00 72.99 Putative protease IBacteroides thetaiotaomicron 3.40.50.880 167 11 73 3.65 4.96
Displaying entries 1 to 49 (page 1 of 1)


Domain ATOM Sequence

>pdb|1vmeA02
DPKKGKVTVIYDSYGFVENVKKAIDSLKEKGFTPVVYKFSDEERPAISEILKDIPDSEALIFGVSTYEAEIHPLRFTLLE
IIDKANYEKPVLVFGVHGWAPSAERTAGELLKETKFRILSFTEIKGSNDERKIEEAISLLKKELE    

Domain COMBS Sequence

>pdb|1vmeA02
DPKKGKVTVIYDSXYGFVENVXKKAIDSLKEKGFTPVVYKFSDEERPAISEILKDIPDSEALIFGVSTYEAEIHPLXRFT
LLEIIDKANYEKPVLVFGVHGWAPSAERTAGELLKETKFRILSFTEIKGSNXDERKIEEAISLLKKELE    

Domain History Events (3)

Insertion by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Flow stage update by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Insertion by auto on 06 Mar 2006 00:09

Cut based on decision in database "DomChop" on "cathdb"