CATH Domain: 1vm9A00 XML data for domain: 1vm9A00

Molscript image for 1vm9A00
1vm9A00
PDB coordinates for domain 1vm9A00

PDB 1vm9, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.102 3-layer Sandwich
2.102.10 Rieske Iron-sulfur Protein
2.102.10.10 'Rieske'-like iron-sulphur domains Gene3D
2.102.10.10.6
2.102.10.10.6.1
2.102.10.10.6.1.1
2.102.10.10.6.1.1.1
2.102.10.10.6.1.1.1.1

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Segment boundaries for domain 1vm9A00

Chopping figure for domain 1vm9A00
DomainStart PDB ResidueStop PDB Residue
1vm9A00 2 110

Structural Neighbourhood (4 entries)

There are 4 matching structural neighberhood comparisons for CATH ID 2.102.10.10.6.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 4 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1fqtA00 90.28 Biphenyl degradationBiphenyl 2,3-dioxygenase [EC:1.14.12.18]Biphenyl dioxygenase system ferredoxin subunitBurkholderia xenovorans LB400Metabolic pathways 2.102.10.10 109 29 97 2.73 2.81
3gceA00 88.01 Nocardioides aromaticivoransFerredoxin component of carbazole 1,9a-dioxygenase 2.102.10.10 104 27 91 1.92 2.09
3c0dA00 86.45 Nitrogen metabolismVibrio parahaemolyticusPutative nitrite reductase NADPH (Small subunit) oxidoreductase proteinNitrite reductase (NAD(P)H) small subunit [EC:1.7.1.4] 2.102.10.10 106 19 93 2.86 3.06
2jzaA01 82.34 Nitrogen metabolismNitrite reductase (NAD(P)H) small subunit [EC:1.7.1.4]Nitrite reductase [NAD(P)H] small subunitPectobacterium atrosepticum 2.102.10.10 118 15 89 3.89 4.33
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Displaying entries 1 to 4 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1vm9A00
SFEKICSLDDIWVGEMETFETSDGTEVLIVNSEEHGVKAYQAMCPHQEILLSEGSYEGGVITCRAHLWTFNDGTGHGINP
DDAALAEYPVEVKGDDIYVSTKGILPNKA
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1vm9A00
SFEKICSLDDIWVGEMETFETSDGTEVLIVNSEEHGVKAYQAMCPHQEILLSEGSYEGGVITCRAHLWTFNDGTGHGINP
DDAALAEYPVEVKGDDIYVSTKGILPNKAHS
BLAST against CATH

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Domain History Events (3)

Insertion by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Flow stage update by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Insertion by auto on 06 Mar 2006 00:09

Cut based on decision in database "DomChop" on "cathdb"