CATH Domain: 1vlbA01 XML data for domain: 1vlbA01

Molscript image for 1vlbA01
1vlbA01
PDB coordinates for domain 1vlbA01

PDB 1vlb, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.10 Roll
3.10.20 Ubiquitin-like (UB roll)
3.10.20.30 Gene3D
3.10.20.30.9
3.10.20.30.9.1
3.10.20.30.9.1.1
3.10.20.30.9.1.1.1
3.10.20.30.9.1.1.1.1

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Segment boundaries for domain 1vlbA01

Chopping figure for domain 1vlbA01
DomainStart PDB ResidueStop PDB Residue
1vlbA01 1 74
1vlbA02 75 193
1vlbA03 208 308
1vlbA04 331 364
1vlbA04 458 580
1vlbA05 365 457
1vlbA06 625 750
1vlbA07 581 624
1vlbA07 751 907

Structural Neighbourhood (40 entries)

There are 40 matching structural neighberhood comparisons for CATH ID 3.10.20.30.9.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 40 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
3etrA01 90.04 Bos taurusXanthine dehydrogenase/oxidase 3.10.20.30 85 35 85 1.49 1.73
1zud400 83.53 Sulfur carrier protein ThiSThiamine biosynthesis ThiSEscherichia coli K-12 3.10.20.30 66 18 74 2.46 3.31
1l5pA00 80.62 FerredoxinTrichomonas vaginalis 3.10.20.30 93 20 76 2.96 3.88
1tygB00 80.27 Sulfur carrier protein ThiSThiamine biosynthesis ThiSBacillus subtilis 3.10.20.30 65 15 74 3.03 4.08
2bs2B01 80.11 Benzoate degradation via CoA ligationButanoate metabolismOxidative phosphorylationTwo-component systemCitrate cycle (TCA cycle) 3.10.20.30 106 20 69 2.15 3.08
3cwiA00 80.09 Thiamine biosynthesis ThiSGeobacter metallireducens GS-15ThiS, thiamine-biosynthesis 3.10.20.30 67 19 77 3.60 4.67
1yqbA01 80.08 Ubiquilin-3Homo sapiensUbiquilin 3.10.20.90 71 7 86 3.08 3.56
2piaA03 79.78 Burkholderia cepaciaPhthalate dioxygenase reductase 3.10.20.30 96 18 72 2.89 3.96
2bwfA00 79.52 Ubiquitin domain-containing protein DSK2Protein binding, bridgingSpindle pole body duplication in nuclear envelopeSaccharomyces cerevisiaeER-associated protein catabolic process 3.10.20.90 77 12 75 2.32 3.08
1m94A00 79.46 Ubiquitin-like protein 5Protein modification processProtein bindingNuclear mRNA splicing, via spliceosomeMating projection 3.10.20.90 73 12 83 3.10 3.70
1i7hC00 79.35 2Fe-2S ferredoxinFerredoxin, 2Fe-2SProtein bindingEscherichia coli K-12 3.10.20.30 108 10 60 2.23 3.71
2h88B01 78.87 Citrate cycle (TCA cycle)Oxidative phosphorylationSuccinate dehydrogenase (ubiquinone) iron-sulfur protein [EC:1.3.5.1]Gallus gallusMetabolic pathways 3.10.20.30 107 17 69 2.68 3.88
1wm3A00 78.57 Small ubiquitin-related modifierHomo sapiensSmall ubiquitin-related modifier 2Protein sumoylationProtein binding 3.10.20.90 72 9 87 4.07 4.63
3a4rA00 78.40 Mus musculusNFATC2-interacting proteinRegulation of transcription, DNA-dependentCytokine production 3.10.20.90 79 12 79 3.55 4.45
2kd0A01 78.30 LRR repeats and ubiquitin-like domain-containing protein At2g30105Arabidopsis thaliana 3.10.20.90 71 14 81 3.27 4.03
2zeqA00 78.27 Synaptic transmission, glutamatergicLearningAdult locomotory behaviorParkinson's diseaseDopamine metabolic process 3.10.20.90 78 10 78 3.01 3.85
1z2mA02 78.18 RIG-I-like receptor signaling pathwayInterferon-induced 17 kDa proteinISG15-protein conjugationHomo sapiensUbiquitin cross-reactive protein 3.10.20.90 77 9 83 3.23 3.89
1wxmA01 77.84 Bladder cancerPathways in cancerNon-small cell lung cancerAcute myeloid leukemiaProtein binding 3.10.20.90 71 12 85 3.99 4.69
1oqyA01 77.84 Nucleotide excision repairNucleotide-excision repairUV excision repair protein RAD23 homolog ASingle-stranded DNA bindingHomo sapiens 3.10.20.90 79 8 83 3.32 3.97
1c1yB00 77.80 RAF proto-oncogene serine/threonine-protein kinaseNeurotrophin signaling pathwayNon-small cell lung cancerT cell receptor signaling pathwayProtein binding 3.10.20.90 77 10 83 3.37 4.05
1wh3A01 77.70 CytoplasmDNA binding59 kDa 2'-5'-oligoadenylate synthase-like proteinThyroid hormone receptor bindingNucleolus 3.10.20.90 71 9 85 3.33 3.91
1ryjA00 77.67 Methanothermobacter thermautotrophicus str. Delta HPutative uncharacterized protein 3.10.20.30 70 14 82 3.46 4.20
2fazA00 77.64 E3 ubiquitin-protein ligase UHRF1RNA polymerase II transcription factor activityProtein bindingCell proliferationSequence-specific DNA binding transcription factor activity 3.10.20.90 77 13 81 3.14 3.84
1wywB00 77.24 Nuclear poreNegative regulation of transcriptionSmall ubiquitin-related modifier 1Protein bindingProtein sumoylation 3.10.20.90 79 13 79 3.91 4.90
1tkeA01 76.87 Aminoacyl-tRNA biosynthesisThreonyl-tRNA synthetaseZinc ion bindingThreonyl-tRNA synthetase [EC:6.1.1.3]RNA binding 3.10.20.30 64 17 74 3.08 4.14
1z2mA01 76.13 RIG-I-like receptor signaling pathwayInterferon-induced 17 kDa proteinISG15-protein conjugationHomo sapiensUbiquitin cross-reactive protein 3.10.20.90 75 10 80 3.09 3.86
2gbjB00 75.90 3.10.20.90 84 10 75 3.18 4.24
1y8rC00 75.73 Nuclear poreNegative regulation of transcriptionSmall ubiquitin-related modifier 1Protein sumoylationProtein binding 3.10.20.90 84 9 71 3.11 4.35
1p1aA00 75.64 Nucleotide excision repairUV excision repair protein RAD23 homolog BSingle-stranded DNA bindingHomo sapiensUV excision repair protein RAD23 3.10.20.90 85 13 77 3.50 4.51
1wx9A00 75.44 Large proline-rich protein BAT3Homo sapiensProtein binding 3.10.20.90 86 8 74 2.86 3.84
1doiA00 75.43 Ferredoxin-1Haloarcula marismortui 3.10.20.30 128 18 52 2.51 4.80
2c60A01 74.52 Neurotrophin signaling pathwayMitogen-activated protein kinase kinase kinase 3MAPKKK cascadeProtein bindingPositive regulation of I-kappaB kinase/NF-kappaB cascade 3.10.20.240 77 5 75 3.25 4.31
2r2oA00 74.24 Semaphorin receptor bindingPlexin BSemaphorin receptor activityHomo sapiensPlexin-B1 3.10.20.90 98 10 64 3.06 4.76
2fnjB00 73.85 Renal cell carcinomaPathways in cancerUbiquitin mediated proteolysisMus musculusTranscription elongation factor B polypeptide 2 3.10.20.90 98 4 64 2.97 4.62
1wgdA00 73.42 Endoplasmic reticulum membraneHomo sapiensHomocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 proteinProtein binding 3.10.20.90 93 6 66 3.16 4.74
2he7A01 73.31 Tight junctionErythrocyte membrane protein band 4.1Homo sapiensBand 4.1-like protein 3Cell-cell junction 3.10.20.90 80 6 80 3.90 4.88
1wxsA00 73.12 CytoplasmUbiquitin-fold modifier 1NucleusProtein ufmylationHomo sapiens 3.10.20.90 88 9 72 3.62 4.98
2nptB01 72.99 Mitogen-activated protein kinase kinase kinase 2Gap junctionMitogen-activated protein kinase kinase kinase 2 [EC:2.7.11.25]GnRH signaling pathwayMAPK signaling pathway 3.10.20.240 81 6 71 3.44 4.80
1v86A00 72.54 Mus musculusPutative uncharacterized protein 3.10.20.90 95 12 64 3.06 4.77
1lfdA00 72.37 Rattus norvegicusRal guanine nucleotide dissociation stimulatorSmall GTPase mediated signal transduction 3.10.20.90 87 5 74 3.61 4.83
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Displaying entries 1 to 40 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1vlbA01
MIQKVITVNGIEQNLFVDAEALLSDVLRQQLGLTGVKVGCEQGQCGACSVILDGKVVRACVTKMKRVADGAQIT
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1vlbA01
MIQKVITVNGIEQNLFVDAEALLSDVLRQQLGLTGVKVGCEQGQCGACSVILDGKVVRACVTKMKRVADGAQIT
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:50

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:50

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:50

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"