CATH Domain: 1vl2A01 XML data for domain: 1vl2A01

Molscript image for 1vl2A01
1vl2A01
PDB coordinates for domain 1vl2A01

PDB 1vl2, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.620 Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1 Gene3D
3.40.50.620.10
3.40.50.620.10.1
3.40.50.620.10.1.1
3.40.50.620.10.1.1.1
3.40.50.620.10.1.1.1.1

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Segment boundaries for domain 1vl2A01

Chopping figure for domain 1vl2A01
DomainStart PDB ResidueStop PDB Residue
1vl2A01 2 177
1vl2A02 178 369
1vl2A03 370 409

Structural Neighbourhood (10 entries)

There are 10 matching structural neighberhood comparisons for CATH ID 3.40.50.620.10.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 10 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1korB01 92.28 Thermus thermophilus HB8Arginine and proline metabolismArgininosuccinate synthase [EC:6.3.4.5]Alanine, aspartate and glutamate metabolismArgininosuccinate synthase 3.40.50.620 166 57 93 1.64 1.75
1kh1C01 88.84 Thermus thermophilus HB8Arginine and proline metabolismArgininosuccinate synthase [EC:6.3.4.5]Alanine, aspartate and glutamate metabolismArgininosuccinate synthase 3.40.50.620 136 58 77 1.36 1.75
1k92A01 86.57 Arginine and proline metabolismAlanine, aspartate and glutamate metabolismMetabolic pathwaysArgininosuccinate synthase [EC:6.3.4.5]Argininosuccinate synthase 3.40.50.620 160 28 84 1.87 2.21
2hmaA01 78.47 TRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [EC:2.1.1.61]TRNA-specific 2-thiouridylase mnmAStreptococcus pneumoniae 3.40.50.620 203 20 77 3.48 4.47
3h7eA01 78.39 Pyrococcus furiosusN-type ATP pyrophosphatase superfamily 3.40.50.620 133 18 70 3.14 4.44
3fiuA00 76.15 Nitrogen metabolismNicotinate and nicotinamide metabolismMetabolic pathwaysNH(3)-dependent NAD(+) synthetaseFrancisella tularensis subsp. holarctica LVS 3.40.50.620 238 10 63 2.86 4.48
1dnpA01 76.14 Protein-chromophore linkageDeoxyribodipyrimidine photo-lyaseDeoxyribodipyrimidine photo-lyase activityProtein bindingDeoxyribodipyrimidine photo-lyase [EC:4.1.99.3] 3.40.50.620 130 6 64 3.17 4.92
2pfsA01 75.77 Universal stress protein (Usp)Nitrosomonas europaeaUniversal stress protein A 3.40.50.620 114 10 59 2.90 4.90
3glvA00 73.90 Thermoplasma volcanium GSS1Lipopolysaccharide core biosynthesis proteinGlycerophospholipid metabolismGlycerol-3-phosphate cytidylyltransferase [EC:2.7.7.39] 3.40.50.620 122 10 60 2.86 4.74
1m1nB03 73.76 Nitrogenase molybdenum-iron protein beta chain [EC:1.18.6.1]Nitrogen metabolismAzotobacter vinelandiiNitrogenase molybdenum-iron protein beta chainMetabolic pathways 3.40.50.1980 106 8 52 2.46 4.65
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Displaying entries 1 to 10 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1vl2A01
KEKVVLAYSGGLDTSVILKWLCEKGFDVIAYVANVGQKDDFVAIKEKALKTGASKVYVEDLRREFVTDYIFTALLGNAMY
EGRYLLGTAIARPLIAKRQVEIAEKEGAQYVAHGATGKGNDQVRFELTYAALNPNLKVISPWKDPEFLAKFKTDLINYAM
EKGIPIKVSKKRPY
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1vl2A01
MGSDKIHHHHHHMKEKVVLAYSGGLDTSVILKWLCEKGFDVIAYVANVGQKDDFVAIKEKALKTGASKVYVEDLRREFVT
DYIFTALLGNAMYEGRYLLGTAIARPLIAKRQVEIAEKEGAQYVAHGATGKGNDQVRFELTYAALNPNLKVISPWKDPEF
LAKFKGRTDLINYAMEKGIPIKVSKKRPY
BLAST against CATH

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Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 19:34

Assigning to "3.40.50.620" based on similarity with "1vl2B01" (NWSI: 100, NWO: 100, SPS: 97.51, SPO: 97, RMSD: 0.52)

Flow stage update by auto on 28 Apr 2006 17:50

NW result present for Domain "1vl2A01"

Flow stage update by auto on 28 Apr 2006 17:45

All required files are present for Domain "1vl2A01"

Flow stage update by auto on 27 Apr 2006 17:31

Beginning processing for Domain "1vl2A01"

Insertion by auto on 06 Mar 2006 00:08

Cut based on decision in database "DomChop" on "cathdb"