CATH Domain: 1vl1A00 XML data for domain: 1vl1A00

Molscript image for 1vl1A00
1vl1A00
PDB coordinates for domain 1vl1A00

PDB 1vl1, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.1360 Gene3D
3.40.50.1360.2
3.40.50.1360.2.1
3.40.50.1360.2.1.1
3.40.50.1360.2.1.1.1
3.40.50.1360.2.1.1.1.1

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Segment boundaries for domain 1vl1A00

Chopping figure for domain 1vl1A00
DomainStart PDB ResidueStop PDB Residue
1vl1A00 3 220

Structural Neighbourhood (3 entries)

There are 3 matching structural neighberhood comparisons for CATH ID 3.40.50.1360.2.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 3 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1y89A00 87.78 Pentose phosphate pathwayMetabolic pathways6-phosphogluconolactonase [EC:3.1.1.31]Vibrio choleraeDevB protein 3.40.50.1360 232 25 90 2.10 2.33
1fs5A00 84.11 Amino sugar and nucleotide sugar metabolismMetabolic pathwaysGlucosamine-6-phosphate deaminase [EC:3.5.99.6]Glucosamine-6-phosphate deaminaseGlucosamine-6-phosphate deaminase activity 3.40.50.1360 266 18 80 2.42 3.02
2o0mA00 75.25 Central glycolytic genes regulatorTranscriptional regulator, SorC familyEnterococcus faecalis 3.40.50.1360 236 8 72 3.62 5.00
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Displaying entries 1 to 3 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1vl1A00
KTVIYLLEDGYVDFVVEKIRTKMEKLLEEKDKIFVVLAGGRTPLPVYEKLAEQKFPWNRIHFFLSDERYVPLDSDQSNFR
NINEVLFSRAKIPSGNVHYVDTSLPIEKACEKYEREIRSATDQFDLAILGMGPDGHVASIFDLETGNKDNLVTFTDPSGD
PKVPRVTLTFRALNTSLYVLFLIRGKEKINRLTEILKDTPLPAYFVRGKEKTVWFVGK
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1vl1A00
MGSDKIHHHHHHMEKTVIYLLEDGYVDFVVEKIRTKMEKLLEEKDKIFVVLAGGRTPLPVYEKLAEQKFPWNRIHFFLSD
ERYVPLDSDQSNFRNINEVLFSRAKIPSGNVHYVDTSLPIEKACEKYEREIRSATDQFDLAILGMGPDGHVASIFDLETG
NKDNLVTFTDPSGDPKVPRVTLTFRALNTSLYVLFLIRGKEKINRLTEILKDTPLPAYFVRGKEKTVWFVGK
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:19

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:19

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:42

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"