Domain assigned by cuff on 12 Nov 2007 12:35
similar structure and same function
| CATH Code | Level Description | Links |
|---|---|---|
3
| Alpha Beta | |
3.40
| 3-Layer(aba) Sandwich | |
3.40.50
| Rossmann fold | |
3.40.50.20
| Gene3D | |
3.40.50.20.16
| ||
3.40.50.20.16.1
| ||
3.40.50.20.16.1.1
| ||
3.40.50.20.16.1.1.1
| ||
3.40.50.20.16.1.1.1.1
|
| Domain | Start PDB Residue | Stop PDB Residue |
|---|---|---|
| 1vkzA01 | 4 | 85 |
| 1vkzA02 | 111 | 180 |
| 1vkzA03 | 181 | 314 |
| 1vkzA04 | 315 | 399 |
There are 29 matching structural neighberhood comparisons for CATH ID 3.40.50.20.16.1.1.1.1 (SIMAX score < 5)
>pdb|1vkzA01 VRVHILGSGGREHAIGWAFAKQGYEVHFYPGNAGTKRDGTNHPYEGEKTLKAIPEEDIVIPGSEEFLVERSNVFGPV
similar structure and same function
same superfamily
No matches in the scan list with a SSAP value above 75.5 share the exact same function as the query. Very similar lonkage and structure. But I am not sure if there is sufficient information to put them into the same H- family.
Great SSAP and Rmsd scores. Very similar in liker fold, a seq similarity of 29. Both are ligases.
Great SSAP and Rmsd scores. Very similar in liker fold, a seq similarity of 29. Both are ligases.
Great SSAP and Rmsd scores. Very similar in liker fold, a seq similarity of 29. Both are ligases.
User 'tronnberg' has allocated a domain to themselves for HomChecking with comment : Grabbed this domain via HomCheck's "Get Me A Domain" button.
User 'tronnberg' has allocated a domain to themselves for HomChecking with comment : Grabbed this domain via HomCheck's "Get Me A Domain" button.
Calculated SCOP results for 1vkzA01 and inserted them into the database.
Adding scan of type "DOMAIN_SCAN_SCOP_CATH" with 11 results for 1vkzA01
Retrieved PRC_PFAMCATH results for job ID SID1880984936394272 and chopping inserted.
Adding scan of type "DOMAIN_SCAN_PRC_PFAMCATH" with 12 results for 1vkzA01
PRC_PFAMCATH job SID1880984936394272 is not yet finished.
The entry "1vkzA01" has been submitted to the PRC_PFAMCATH webservice.
The entry "1vkzA01" has been submitted to the PRC_PFAMCATH webservice.
Retrieved SSAP results for job ID SID0476743478385280 and chopping inserted.
Adding scan of type "DOMAIN_SCAN_SSAP_CATH" with 2425 results for 1vkzA01
SSAP job SID0476743478385280 is not yet finished.
The entry "1vkzA01" has been submitted to the SSAP webservice.
The entry "1vkzA01" has been submitted to the SSAP webservice.
Retrieved PRC results for job ID SID6037780837281632 and inserted them into the database.
Adding scan of type "DOMAIN_SCAN_PRC_CATH" with 2 results for 1vkzA01
PRC job SID6037780837281632 is not yet finished.
The entry "1vkzA01" has been submitted to the PRC webservice.
The entry "1vkzA01" has been submitted to the PRC webservice.
Retrieved HMM(SAM) results for job ID SID7495410274202848 and inserted them into the database.
Adding scan of type "DOMAIN_SCAN_SAM_CATH" with 2 results for 1vkzA01
HMM(SAM) job SID7495410274202848 is not yet finished.
The entry "1vkzA01" has been submitted to the HMM (SAM) webservice.
The entry "1vkzA01" has been submitted to the HMM (SAM) webservice.
Retrieved "1vkzA01" CATHEDRAL results for job ID SID5425706401214836 and inserted them into the database.
Adding scan of type "DOMAIN_SCAN_CATHEDRAL_CATH" with 495 results for 1vkzA01
"1vkzA01" CATHEDRAL job SID5425706401214836 is not yet finished.
The entry "1vkzA01" has been submitted to the CATHEDRAL webservice.
The entry "1vkzA01" has been submitted to the CATHEDRAL webservice.
ScanList with 9778 domains written to "/cath/data/current/scanlists/cathdb_current.fletcher/1vkzA01.scanlist" for "1vkzA01"
Writing ScanList containing 9778 domains to file "/cath/data/current/scanlists/cathdb_current.fletcher/1vkzA01.scanlist" for domain "1vkzA01"
Waiting for 984 new domains (example : 1h4uA00) to be processed so that they can be scanned against too.
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No satisfactory AssignClose result found.
No in_process hits for Domain "1vkzA01" ready to be processed
NW result present for Domain "1vkzA01"
All required files are present for Domain "1vkzA01"
Beginning processing for Domain "1vkzA01"
Final ChopClose added based on similarity with "1vkzB"