CATH Domain: 1vkpB00 XML data for domain: 1vkpB00

Molscript image for 1vkpB00
1vkpB00
PDB coordinates for domain 1vkpB00

PDB 1vkp, Chain B, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.75 5-stranded Propeller
3.75.10 L-arginine/glycine Amidinotransferase; Chain A
3.75.10.10 L-arginine/glycine Amidinotransferase; Chain A Gene3D
3.75.10.10.2
3.75.10.10.2.1
3.75.10.10.2.1.1
3.75.10.10.2.1.1.1
3.75.10.10.2.1.1.1.1

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Segment boundaries for domain 1vkpB00

Chopping figure for domain 1vkpB00
DomainStart PDB ResidueStop PDB Residue
1vkpB00 7 376

Structural Neighbourhood (2 entries)

There are 2 matching structural neighberhood comparisons for CATH ID 3.75.10.10.2.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 2 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
3hvmA00 87.29 PutativeHelicobacter pylori J99 3.75.10.10 330 27 89 1.64 1.82
1h70A00 74.63 Pseudomonas aeruginosaDimethylargininase [EC:3.5.3.18]Putative uncharacterized protein 3.75.10.10 255 12 67 3.24 4.83
[1]
Displaying entries 1 to 2 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1vkpB00
SPAEHGYYPAEWDSHAQTWIGWPERQDNWRHNALPAQRVFAGVAKAISKFEPVTVCASPAQWENARKQLPEDIRVVESND
SWFRDSGPTFIVRKRNRNIAGIDWNFNAWGGANDGCYNDWSHDLLVSRKILALERIPRFQHSILEGGSIHVDGEGTCLVT
EECLLNKNRNPHSKEQIEEELKKYLGVQSFIWLPRGLYGDEDTNGHIDNCCFARPGVVLLSWTDDETDPQYERSVEALSV
LSNSIDARGRKIQVIKLYIPEPLYTEEESSGITQDGEAIPRLAGTRLAASYVNFYIANGGIIAPQFGDPIRDKEAIRVLS
DTFPHHSVVGIENAREIVLAGGNIHCITQQQPAEPT
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1vkpB00
XEESRESPAEHGYYXPAEWDSHAQTWIGWPERQDNWRHNALPAQRVFAGVAKAISKFEPVTVCASPAQWENARKQLPEDI
RVVEXSXNDSWFRDSGPTFIVRKRPVKLSSLNRNIAGIDWNFNAWGGANDGCYNDWSHDLLVSRKILALERIPRFQHSXI
LEGGSIHVDGEGTCLVTEECLLNKNRNPHXSKEQIEEELKKYLGVQSFIWLPRGLYGDEDTNGHIDNXCCFARPGVVLLS
WTDDETDPQYERSVEALSVLSNSIDARGRKIQVIKLYIPEPLYXTEEESSGITQDGEAIPRLAGTRLAASYVNFYIANGG
IIAPQFGDPIRDKEAIRVLSDTFPHHSVVGIENAREIVLAGGNIHCITQQQPAEPTSVAENGH
BLAST against CATH

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Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 19:29

Assigning to "3.75.10.10" based on similarity with "1vkpA00" (NWSI: 97.911227154047, NWO: 100, SPS: 98.05, SPO: 99, RMSD: 0.34)

Flow stage update by auto on 28 Apr 2006 17:50

NW result present for Domain "1vkpB00"

Flow stage update by auto on 28 Apr 2006 17:45

All required files are present for Domain "1vkpB00"

Flow stage update by auto on 27 Apr 2006 17:31

Beginning processing for Domain "1vkpB00"

Insertion by auto on 09 Mar 2006 09:54

Final ChopClose added based on similarity with "1vkpA" [LEE: 0, LME: 0, MR: 2, LG: 2, SS: 98.05, SI: 97.911227154047, SO: 100]