CATH Domain: 1vk4A00 XML data for domain: 1vk4A00

Molscript image for 1vk4A00
1vk4A00
PDB coordinates for domain 1vk4A00

PDB 1vk4, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.1190 UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase
3.40.1190.20 Gene3D
3.40.1190.20.10
3.40.1190.20.10.1
3.40.1190.20.10.1.1
3.40.1190.20.10.1.1.1
3.40.1190.20.10.1.1.1.1

Segment boundaries for domain 1vk4A00

Chopping figure for domain 1vk4A00
DomainStart PDB ResidueStop PDB Residue
1vk4A00 -6 281

Structural Neighbourhood (10 entries)

There are 10 matching structural neighberhood comparisons for CATH ID 3.40.1190.20.10.1.1.1.1 (SIMAX score < 5)

Displaying entries 1 to 10 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2fv7A00 81.06 Pentose phosphate pathwayRibokinaseRibokinase [EC:2.7.1.15]Homo sapiens 3.40.1190.20 308 14 83 2.94 3.51
1v1aA00 79.97 Thermus thermophilus HB82-dehydro-3-deoxygluconokinase [EC:2.7.1.45]Pentose and glucuronate interconversionsPentose phosphate pathway2-keto-3-deoxy-gluconate kinase 3.40.1190.20 301 18 86 2.98 3.44
1tyyB00 79.83 Amino sugar and nucleotide sugar metabolismStarch and sucrose metabolismFructose and mannose metabolismMetabolic pathwaysFructokinase [EC:2.7.1.4] 3.40.1190.20 292 14 89 3.81 4.25
2qcvA01 79.61 5-dehydro-2-deoxygluconokinase [EC:2.7.1.92]Bacillus haloduransInositol phosphate metabolismMetabolic pathways5-dehydro-2-deoxygluconokinase 3.40.1190.20 262 16 83 3.04 3.63
1ub0A00 79.33 TransferaseThiamine metabolismHydroxymethylpyrimidine kinase [EC:2.7.1.49]Phosphomethylpyrimidine kinase [EC:2.7.4.7]Metabolic pathways 3.40.1190.20 246 15 79 3.36 4.23
2i5bA00 79.05 Thiamine metabolismBacillus subtilisPyridoxine kinasePhosphomethylpyrimidine kinase [EC:2.7.4.7]Metabolic pathways 3.40.1190.20 269 12 84 4.14 4.88
2abqA00 78.98 Fructose 1-phosphate kinase1-phosphofructokinase [EC:2.7.1.56]Fructose and mannose metabolismBacillus halodurans 3.40.1190.20 302 17 84 3.61 4.28
2afbB00 78.30 Thermotoga maritima2-dehydro-3-deoxygluconokinase [EC:2.7.1.45]Pentose phosphate pathwayPentose and glucuronate interconversions2-keto-3-deoxygluconate kinase 3.40.1190.20 319 16 81 3.44 4.20
3bf5A01 77.53 Pentose phosphate pathwayRibokinase [EC:2.7.1.15]Thermoplasma acidophilumRibokinase related protein 3.40.1190.20 221 14 75 3.23 4.29
2ajrA01 76.88 Thermotoga maritima1-phosphofructokinase [EC:2.7.1.56]Fructose and mannose metabolismSugar kinase, pfkB family 3.40.1190.20 259 14 82 3.11 3.78
Displaying entries 1 to 10 (page 1 of 1)


Domain ATOM Sequence

>pdb|1vk4A00
IHHHHHHITFIGHVSKDVNVVDGKREIAYGGGVVGAITSSLLGVKTKVITKCTREDVSKFSFLRDNGVEVVFLKSPRTTS
IENRYTRESFLISAADPFTESDLAFIEGEAVHINPLWYGEFPEDLIPVLRRKVFLSADAQGFVRVPENEKLVYRDWEKEK
YLKYLDLFKVDSREAETLTGTNDLRESCRIIRSFGAKIILATHASGVIVFDGNFYEASFRSWSLEGRTGRGDTCTAAFLV
GFVFKKSIEKATKFAAAVTSVKRHPGPLRREDLEAIS    

Domain COMBS Sequence

>pdb|1vk4A00
MGSDKIHHHHHHXITFIGHVSKDVNVVDGKREIAYGGGVVXGAITSSLLGVKTKVITKCTREDVSKFSFLRDNGVEVVFL
KSPRTTSIENRYGSDPDTRESFLISAADPFTESDLAFIEGEAVHINPLWYGEFPEDLIPVLRRKVXFLSADAQGFVRVPE
NEKLVYRDWEXKEKYLKYLDLFKVDSREAETLTGTNDLRESCRIIRSFGAKIILATHASGVIVFDGNFYEASFRSWSLEG
RTGRGDTCTAAFLVGFVFKKXSIEKATKFAAAVTSVKXRHPGPLRREDLEAISGDQYF    

Domain History Events (3)

Insertion by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Flow stage update by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Insertion by auto on 06 Mar 2006 00:08

Cut based on decision in database "DomChop" on "cathdb"