CATH Domain: 1vk0A00 XML data for domain: 1vk0A00

Molscript image for 1vk0A00
1vk0A00
PDB coordinates for domain 1vk0A00

PDB 1vk0, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.420 Nucleotidyltransferase; domain 5
3.30.420.10 Gene3D
3.30.420.10.16
3.30.420.10.16.1
3.30.420.10.16.1.1
3.30.420.10.16.1.1.1
3.30.420.10.16.1.1.1.1

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Segment boundaries for domain 1vk0A00

Chopping figure for domain 1vk0A00
DomainStart PDB ResidueStop PDB Residue
1vk0A00 1 206

Structural Neighbourhood (1 entries)

There are 1 matching structural neighberhood comparisons for CATH ID 3.30.420.10.16.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 1 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2kfnA01 78.53 Pyrimidine metabolismDNA replicationNucleotide excision repairPurine metabolismMetabolic pathways 3.30.420.10 217 12 78 3.71 4.74
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Displaying entries 1 to 1 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1vk0A00
SASFDGPKFKTDGSYVQTKTIDVGSSTDISPYLSLIREDSILNGNRAVIFDVYWDVGFTKTSGWSLSSVKLSTRNLCLFL
RLPKPFHDNLKDLYRFFASKFVTFVGVQIEEDLDLLRENHGLVIRNAINVGKLAAEARGTLVLEFLGTRELAHRVLWSDL
GQLDSIEAKWEKAGPEEQLEAAAIEGWLIVNVWDQLSDE
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1vk0A00
SASFDGPKFKXTDGSYVQTKTIDVGSSTDISPYLSLIREDSILNGNRAVIFDVYWDVGFPETETKTKTSGWSLSSVKLST
RNLCLFLRLPKPFHDNLKDLYRFFASKFVTFVGVQIEEDLDLLRENHGLVIRNAINVGKLAAEARGTLVLEFLGTRELAH
RVLWSDLGQLDSIEAKWEKAGPEEQLEAAAIEGWLIVNVWDQLSDE
BLAST against CATH

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Domain History Events (3)

Insertion by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Flow stage update by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Insertion by auto on 06 Mar 2006 00:08

Cut based on decision in database "DomChop" on "cathdb"