CATH Domain: 1vjuB00 XML data for domain: 1vjuB00

Molscript image for 1vjuB00
1vjuB00
PDB coordinates for domain 1vjuB00

PDB 1vju, Chain B, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.1500 oxygen-dependent coproporphyrinogen oxidase
3.40.1500.10 oxygen-dependent coproporphyrinogen oxidase Gene3D
3.40.1500.10.1
3.40.1500.10.1.1
3.40.1500.10.1.1.1
3.40.1500.10.1.1.1.1
3.40.1500.10.1.1.1.1.1

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Segment boundaries for domain 1vjuB00

Chopping figure for domain 1vjuB00
DomainStart PDB ResidueStop PDB Residue
1vjuB00 6 309

Structural Neighbourhood (0 entries)

Sorry, we could not find any non-redundant representatives with similar structural scores to this domain in CATH.


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Domain ATOM Sequence 

>pdb|1vjuB00
HHHSLAVEAVKDFLLKLQDDICEALEAEDGQATFVEDKWTREGGGGGRTRVVDGAVIEKGGVNFSHVYGKGLDIAGCNFE
AGVSLVIHPKNPHVPTSHANVRLFVAEREGKEPVWWFGGGFDLTPYYAVEEDCRDFHQVAQDLCKPFGADVYARFKGWCD
EYFFIPYRNEARGIGGLFFDDLNEWPFEKCFEFVQAVGKGYDAYIPIVNRRKNTPYTEQQVEFQEFRRGRYAEFNLVIDR
GTKFGLQSGGRTESILISLPPRARWGYNWQPEPGTPEARLTEYFLTKRQWV
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1vjuB00
XAHHHHHHXSLAVEAVKDFLLKLQDDICEALEAEDGQATFVEDKWTREGGGGGRTRVXVDGAVIEKGGVNFSHVYGKGLP
XSSTERHPDIAGCNFEAXGVSLVIHPKNPHVPTSHANVRLFVAEREGKEPVWWFGGGFDLTPYYAVEEDCRDFHQVAQDL
CKPFGADVYARFKGWCDEYFFIPYRNEARGIGGLFFDDLNEWPFEKCFEFVQAVGKGYXDAYIPIVNRRKNTPYTEQQVE
FQEFRRGRYAEFNLVIDRGTKFGLQSGGRTESILISLPPRARWGYNWQPEPGTPEARLTEYFLTKRQWV
BLAST against CATH

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Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 19:06

Assigning to "3.40.1500.10" based on similarity with "1vjuA00" (NWSI: 98.0582524271845, NWO: 100, SPS: 98.04, SPO: 98, RMSD: 0.61)

Flow stage update by auto on 28 Apr 2006 17:50

NW result present for Domain "1vjuB00"

Flow stage update by auto on 28 Apr 2006 17:45

All required files are present for Domain "1vjuB00"

Flow stage update by auto on 27 Apr 2006 17:31

Beginning processing for Domain "1vjuB00"

Insertion by auto on 09 Mar 2006 05:21

Final ChopClose added based on similarity with "1vjuA" [LEE: 2, LME: 0, MR: 0, LG: 2, SS: 98.04, SI: 98.0582524271845, SO: 100]