CATH Domain: 1vjsA03 XML data for domain: 1vjsA03

Molscript image for 1vjsA03
1vjsA03
PDB coordinates for domain 1vjsA03

PDB 1vjs, Chain A, Domain 3

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.60 Sandwich
2.60.40 Immunoglobulin-like
2.60.40.1180 Golgi alpha-mannosidase II Gene3D
2.60.40.1180.9
2.60.40.1180.9.1
2.60.40.1180.9.1.1
2.60.40.1180.9.1.1.1
2.60.40.1180.9.1.1.1.2

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Segment boundaries for domain 1vjsA03

Chopping figure for domain 1vjsA03
DomainStart PDB ResidueStop PDB Residue
1vjsA01 3 103
1vjsA01 206 396
1vjsA02 104 205
1vjsA03 397 482

Structural Neighbourhood (20 entries)

There are 20 matching structural neighberhood comparisons for CATH ID 2.60.40.1180.9.1.1.1.2 (SIMAX score < 5)

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Displaying entries 1 to 20 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1ua7A02 83.30 Starch and sucrose metabolismBacillus subtilisAlpha-amylaseAlpha-amylase [EC:3.2.1.1]Metabolic pathways 2.60.40.1180 78 12 86 2.17 2.52
1wzlA04 82.75 Neopullulanase 2Thermoactinomyces vulgaris 2.60.40.1180 83 9 90 3.26 3.59
1ea9C04 81.97 Bacillus sp.Cyclomaltodextrinase 2.60.40.1180 81 11 89 2.84 3.17
1j0hA04 81.44 NeopullulanaseGeobacillus stearothermophilus 2.60.40.1180 83 6 89 3.76 4.19
3edfA03 81.09 CyclomaltodextrinaseFlavobacterium sp. 92 2.60.40.1180 80 6 87 3.15 3.61
1m7xA03 79.97 Starch and sucrose metabolismMetabolic pathways1,4-alpha-glucan branching enzyme [EC:2.4.1.18]Glycogen biosynthetic process1,4-alpha-glucan-branching enzyme 2.60.40.1180 106 8 76 2.72 3.56
1ktbA02 79.51 Alpha-N-acetylgalactosaminidaseGallus gallus 2.60.40.1180 91 6 87 3.66 4.16
1zjaA03 78.82 Pseudomonas mesoacidophilaSucrose isomerase 2.60.40.1180 78 10 83 3.17 3.78
1uokA03 78.81 Bacillus cereusOligo-1,6-glucosidase 2.60.40.1180 78 6 83 2.86 3.41
1gjwA02 78.58 Thermotoga maritimaMaltodextrin glycosyltransferase 2.60.40.1180 68 13 72 3.12 4.31
1g5aA04 77.99 AmylosucraseNeisseria polysaccharea 2.60.40.1180 74 13 78 3.65 4.67
1iv8A05 77.78 Sulfolobus acidocaldariusGlycosyltrehalose-producing enzyme 2.60.40.1180 66 12 73 3.15 4.28
1lwjA03 77.49 4-alpha-glucanotransferase [EC:2.4.1.25]Thermotoga maritimaStarch and sucrose metabolism4-alpha-glucanotransferaseMetabolic pathways 2.60.40.1180 50 4 56 2.10 3.73
3hg3B02 77.14 Galactose metabolismAlpha-galactosidase AExtracellular regionGlycosphingolipid catabolic processGlycosphingolipid biosynthesis - globo series 2.60.40.1180 101 6 83 3.56 4.28
1bf2A03 76.99 Pseudomonas amyloderamosaIsoamylase 2.60.40.1180 114 8 71 3.20 4.50
3clwC01 76.78 Bacteroides fragilis NCTC 9343Conserved hypothetical exported protein 2.60.40.1180 100 5 73 3.30 4.52
1eh9A02 75.65 Sulfolobus solfataricusMalto-oligosyltrehalose trehalohydrolase 2.60.40.1180 62 4 67 2.86 4.22
3cc1A02 75.15 BH1870 proteinBacillus halodurans 2.60.40.1180 84 15 82 3.54 4.28
1gcyA02 75.06 Pseudomonas stutzeriGlucan 1,4-alpha-maltotetraohydrolase 2.60.40.1180 56 10 62 2.98 4.80
1ht6A02 74.83 Alpha-amylase type A isozymeHordeum vulgare 2.60.40.1180 57 7 60 2.80 4.60
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Displaying entries 1 to 20 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1vjsA03
GAQHDYFDHHDIVGWTREGDSSVANSGLAALITDGPGGAKRMYVGRQNAGETWHDITGNRSEPVVINSEGWGEFHVNGGS
VSIYVQ
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1vjsA03
GAQHDYFDHHDIVGWTREGDSSVANSGLAALITDGPGGAKRMYVGRQNAGETWHDITGNRSEPVVINSEGWGEFHVNGGS
VSIYVQR
BLAST against CATH

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Domain History Events (9)

Domain assigned by auto on 15 Feb 2008 17:24

Assigning to "2.60.40.1180" based on similarity with "1bplB02"

Flow stage update by auto on 15 Feb 2008 17:10

No in_process hits for Domain "1vjsA03" ready to be processed

Update comment by auto on 23 Nov 2007 14:06

Domain "1vjsA03" hits Domain "1bplB02" (100% over 100%) which is currently in process

Flow stage update by auto on 23 Nov 2007 14:03

Domain "1vjsA03" hits Domain "1bplB02" (100% over 100%) which is currently in process

Flow stage update by auto on 23 Nov 2007 14:02

NW result present for Domain "1vjsA03"

Flow stage update by auto on 23 Nov 2007 14:01

All required files are present for Domain "1vjsA03"

Flow stage update by auto on 13 Nov 2007 00:10

Beginning processing for Domain "1vjsA03"

Update comment by auto on 16 Oct 2007 19:44

Around September/October 2007, this domain was renamed from "1vjs003" to "1vjsA03" as part of the work to deal with the remediation of the PDB (see http://remediation.wwpdb.org). Please see ticket:207 or wiki:Remediation on the CATH Trac system for more details.

Insertion by cuff on 25 Sep 2007 15:13

nice chopping