CATH Domain: 1vjkA00 XML data for domain: 1vjkA00

Molscript image for 1vjkA00
1vjkA00
PDB coordinates for domain 1vjkA00

PDB 1vjk, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.10 Roll
3.10.20 Ubiquitin-like (UB roll)
3.10.20.30 Gene3D
3.10.20.30.4
3.10.20.30.4.1
3.10.20.30.4.1.1
3.10.20.30.4.1.1.1
3.10.20.30.4.1.1.1.1

[top]
Segment boundaries for domain 1vjkA00

Chopping figure for domain 1vjkA00
DomainStart PDB ResidueStop PDB Residue
1vjkA00 1 88

Structural Neighbourhood (52 entries)

There are 52 matching structural neighberhood comparisons for CATH ID 3.10.20.30.4.1.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 52 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1v8cA01 88.51 Threonine synthaseThermus thermophilus 3.10.20.30 85 29 91 3.17 3.45
3a4rA00 83.37 Mus musculusNFATC2-interacting proteinRegulation of transcription, DNA-dependentCytokine production 3.10.20.90 79 15 78 2.20 2.81
1z2mA01 82.91 RIG-I-like receptor signaling pathwayInterferon-induced 17 kDa proteinISG15-protein conjugationHomo sapiensUbiquitin cross-reactive protein 3.10.20.90 75 18 78 2.50 3.20
1yqbA01 82.84 Ubiquilin-3Homo sapiensUbiquilin 3.10.20.90 71 21 75 2.32 3.06
1h4rA01 82.74 Negative regulation of cell-cell adhesionSchwann cell proliferationCytoskeletonNucleolusEarly endosome 3.10.20.90 78 8 77 2.02 2.62
2k9xA00 82.53 Ubiquitin related modifier 1Trypanosoma bruceiPutative uncharacterized protein 3.10.20.30 102 18 85 3.96 4.64
1zud400 82.44 Sulfur carrier protein ThiSThiamine biosynthesis ThiSEscherichia coli K-12 3.10.20.30 66 19 67 1.92 2.83
1ryjA00 82.40 Methanothermobacter thermautotrophicus str. Delta HPutative uncharacterized protein 3.10.20.30 70 22 73 2.11 2.87
1wywB00 82.35 Nuclear poreNegative regulation of transcriptionSmall ubiquitin-related modifier 1Protein bindingProtein sumoylation 3.10.20.90 79 13 79 2.77 3.49
1wh3A01 82.30 CytoplasmDNA binding59 kDa 2'-5'-oligoadenylate synthase-like proteinThyroid hormone receptor bindingNucleolus 3.10.20.90 71 14 75 2.51 3.31
2zeqA00 82.21 Synaptic transmission, glutamatergicLearningAdult locomotory behaviorParkinson's diseaseDopamine metabolic process 3.10.20.90 78 12 79 3.26 4.11
1p1aA00 82.03 Nucleotide excision repairUV excision repair protein RAD23 homolog BSingle-stranded DNA bindingHomo sapiensUV excision repair protein RAD23 3.10.20.90 85 16 80 3.20 3.98
1y8rC00 82.01 Nuclear poreNegative regulation of transcriptionSmall ubiquitin-related modifier 1Protein sumoylationProtein binding 3.10.20.90 84 13 79 2.82 3.56
1wm3A00 82.00 Small ubiquitin-related modifierHomo sapiensSmall ubiquitin-related modifier 2Protein sumoylationProtein binding 3.10.20.90 72 12 77 2.51 3.26
2he7A01 81.90 Tight junctionErythrocyte membrane protein band 4.1Homo sapiensBand 4.1-like protein 3Cell-cell junction 3.10.20.90 80 11 79 2.17 2.74
2bwfA00 81.88 Ubiquitin domain-containing protein DSK2Protein binding, bridgingSpindle pole body duplication in nuclear envelopeSaccharomyces cerevisiaeER-associated protein catabolic process 3.10.20.90 77 16 78 2.92 3.74
1lfdA00 81.80 Rattus norvegicusRal guanine nucleotide dissociation stimulatorSmall GTPase mediated signal transduction 3.10.20.90 87 6 85 3.05 3.59
3ge3C00 81.38 Pseudomonas mendocinaToluene-4-monooxygenase system protein B 3.10.20.270 83 7 82 3.35 4.05
1wx9A00 81.34 Large proline-rich protein BAT3Homo sapiensProtein binding 3.10.20.90 86 15 79 3.15 3.97
1t0yA00 81.33 Caenorhabditis elegansTubulin-specific chaperone B 3.10.20.90 90 10 77 2.89 3.72
1z2mA02 81.20 RIG-I-like receptor signaling pathwayInterferon-induced 17 kDa proteinISG15-protein conjugationHomo sapiensUbiquitin cross-reactive protein 3.10.20.90 77 10 79 2.88 3.63
2kd0A01 81.16 LRR repeats and ubiquitin-like domain-containing protein At2g30105Arabidopsis thaliana 3.10.20.90 71 11 75 2.58 3.40
2fazA00 80.91 E3 ubiquitin-protein ligase UHRF1RNA polymerase II transcription factor activityProtein bindingCell proliferationSequence-specific DNA binding transcription factor activity 3.10.20.90 77 12 80 3.42 4.25
1tkeA01 80.88 Aminoacyl-tRNA biosynthesisThreonyl-tRNA synthetaseZinc ion bindingThreonyl-tRNA synthetase [EC:6.1.1.3]RNA binding 3.10.20.30 64 9 72 2.57 3.55
1m94A00 80.79 Ubiquitin-like protein 5Protein modification processProtein bindingNuclear mRNA splicing, via spliceosomeMating projection 3.10.20.90 73 10 78 2.85 3.65
1tygB00 80.75 Sulfur carrier protein ThiSThiamine biosynthesis ThiSBacillus subtilis 3.10.20.30 65 15 66 2.50 3.75
1h8cA00 80.34 Cytoplasmic sequestering of NF-kappaBHeat shock protein bindingFAS-associated factor 1CytosolPositive regulation of protein complex assembly 3.10.20.90 82 6 78 2.63 3.36
2c60A01 80.30 Neurotrophin signaling pathwayMitogen-activated protein kinase kinase kinase 3MAPKKK cascadeProtein bindingPositive regulation of I-kappaB kinase/NF-kappaB cascade 3.10.20.240 77 6 72 2.52 3.48
1wmhA00 80.23 Tight junctionInsulin signaling pathwayEndocytosisVesicle-mediated transportProtein binding 3.10.20.240 83 16 77 2.61 3.39
1oqyA01 80.22 Nucleotide excision repairNucleotide-excision repairUV excision repair protein RAD23 homolog ASingle-stranded DNA bindingHomo sapiens 3.10.20.90 79 17 82 3.12 3.77
3cwiA00 80.06 Thiamine biosynthesis ThiSGeobacter metallireducens GS-15ThiS, thiamine-biosynthesis 3.10.20.30 67 19 70 2.70 3.85
2kfjA00 79.71 Cell division control protein 24MAPK signaling pathway - yeastMating projection tipInvasive growth in response to glucose limitationCell division control protein 24 3.10.20.240 86 10 77 2.77 3.60
2fnjB00 79.67 Renal cell carcinomaPathways in cancerUbiquitin mediated proteolysisMus musculusTranscription elongation factor B polypeptide 2 3.10.20.90 98 8 69 2.89 4.17
1c1yB00 79.59 RAF proto-oncogene serine/threonine-protein kinaseNeurotrophin signaling pathwayNon-small cell lung cancerT cell receptor signaling pathwayProtein binding 3.10.20.90 77 10 78 2.84 3.63
2rd0A01 79.35 Jak-STAT signaling pathwayAldosterone-regulated sodium reabsorptionNeurotrophin signaling pathwayNon-small cell lung cancerT cell receptor signaling pathway 3.10.20.90 100 11 73 3.06 4.19
1v2yA00 79.30 U11/U12 small nuclear ribonucleoprotein 25 kDa proteinMus musculus 3.10.20.90 105 13 69 2.30 3.31
2nptB01 79.17 Mitogen-activated protein kinase kinase kinase 2Gap junctionMitogen-activated protein kinase kinase kinase 2 [EC:2.7.11.25]GnRH signaling pathwayMAPK signaling pathway 3.10.20.240 81 9 74 3.49 4.67
1ip9A00 78.96 MAPK signaling pathway - yeastMating projection tipIdentical protein bindingEstablishment of cell polarityPhosphatidylinositol-3-phosphate binding 3.10.20.240 85 11 74 2.77 3.71
1v5oA00 78.93 Mus musculusDNA damage-inducible protein 1Protein DDI1 homolog 1 3.10.20.90 102 10 71 3.27 4.57
2r2oA00 78.68 Semaphorin receptor bindingPlexin BSemaphorin receptor activityHomo sapiensPlexin-B1 3.10.20.90 98 6 72 3.09 4.27
1wxmA01 78.65 Bladder cancerPathways in cancerNon-small cell lung cancerAcute myeloid leukemiaProtein binding 3.10.20.90 71 14 74 2.88 3.85
3kh0A00 78.45 Ral guanine nucleotide dissociation stimulatorSmall GTPase regulator activityHomo sapiens 3.10.20.90 102 9 73 3.62 4.92
1s3sH00 78.28 Rattus norvegicusGolgi organizationCellular membrane fusionNSFL1 cofactor p47Protein binding 3.10.20.90 107 6 64 2.03 3.15
3d32B00 78.09 Regulation of autophagySynaptic transmissionPlasma membraneProtein targetingGamma-aminobutyric acid receptor-associated protein 3.10.20.90 116 12 65 3.14 4.79
1uh6A00 78.09 Mus musculusUbiquitin-like protein 5Ubiquitin-like protein 5 3.10.20.90 100 8 68 2.79 4.10
1oeyL00 77.85 Protein dimerization activityLeukocyte transendothelial migrationNeutrophil cytosolic factor 4CytosolNADPH oxidase complex 3.10.20.240 96 11 72 3.53 4.84
1oeyA00 77.71 Protein C-terminus bindingNeutrophil cytosol factor 2Leukocyte transendothelial migrationCellular defense responseSuperoxide anion generation 3.10.20.90 78 11 72 2.64 3.65
1se9A00 77.21 Membrane-anchored ubiquitin-fold protein 1Arabidopsis thaliana 3.10.20.90 101 11 70 3.15 4.48
1j8cA00 77.19 CytoplasmPlasma membraneHomo sapiensUbiquilinUbiquilin-2 3.10.20.90 103 20 65 2.48 3.81
2zjdA00 76.72 Microtubule-associated protein 1 light chainHomo sapiensMicrotubule-associated proteins 1A/1B light chain 3BProtein binding 3.10.20.90 121 16 63 3.02 4.75
1k8rB00 76.63 Plasma membraneInduction of conjugation upon nitrogen starvationProtein bindingSchizosaccharomyces pombeProtein kinase byr2 3.10.20.90 82 4 71 3.45 4.84
1rwsA00 75.98 Pyrococcus furiosusPutative uncharacterized protein 3.10.20.30 68 30 72 3.57 4.93
[1]
Displaying entries 1 to 52 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|1vjkA00
SVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSWDEELKDGDV
VGVFPPVS
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|1vjkA00
AHHHHHHGSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSWD
EELKDGDVVGVFPPVSGG
BLAST against CATH

[top]
Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 19:01

Assigning to "3.10.20.30" based on similarity with "1nviD00" (NWSI: 38.2716049382716, NWO: 82.6530612244898, SPS: 87.38, SPO: 86, RMSD: 1.88)

Flow stage update by auto on 28 Apr 2006 17:50

NW result present for Domain "1vjkA00"

Flow stage update by auto on 28 Apr 2006 17:45

All required files are present for Domain "1vjkA00"

Flow stage update by auto on 27 Apr 2006 17:31

Beginning processing for Domain "1vjkA00"

Insertion by auto on 06 Mar 2006 00:08

Cut based on decision in database "DomChop" on "cathdb"