CATH Domain: 1vjkA00 XML data for domain: 1vjkA00

Molscript image for 1vjkA00
1vjkA00
PDB coordinates for domain 1vjkA00

PDB 1vjk, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.10 Roll
3.10.20 Ubiquitin-like (UB roll)
3.10.20.30 Gene3D
3.10.20.30.4
3.10.20.30.4.1
3.10.20.30.4.1.1
3.10.20.30.4.1.1.1
3.10.20.30.4.1.1.1.1

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Segment boundaries for domain 1vjkA00

Chopping figure for domain 1vjkA00
DomainStart PDB ResidueStop PDB Residue
1vjkA00 1 88

Structural Neighbourhood (49 entries)

There are 49 matching structural neighberhood comparisons for CATH ID 3.10.20.30.4.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 49 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1v8cA01 88.51 Threonine synthaseThermus thermophilus 3.10.20.30 85 29 91 3.17 3.45
1yqbA01 82.84 Ubiquitin cycleUbiquilin-3Homo sapiensMale gonad (testis)Modification by ubiquitin-related proteins 3.10.20.90 71 21 75 2.32 3.06
1h4rA01 82.74 CytoplasmNegative regulation of cell proliferationNegative regulation of cell-cell adhesionSchwann cell proliferationNegative regulation of JAK-STAT cascade 3.10.20.90 78 8 77 2.02 2.62
2hj8A00 82.68 Ubiquitin cycleISG15-protein conjugationHomo sapiensInterferon-induced 17 kDa protein precursor 3.10.20.90 75 10 78 2.48 3.17
2k9xA00 82.53 Trypanosoma bruceiPutative uncharacterized protein 3.10.20.30 102 18 85 3.96 4.64
1zud400 82.44 3.10.20.30 66 19 67 1.92 2.83
1ryjA00 82.40 Methanothermobacter thermautotrophicus str. Delta HPutative uncharacterized protein 3.10.20.30 70 22 73 2.11 2.87
1wywB00 82.35 NucleusDNA repairNuclear poreProtein bindingNegative regulation of transcription 3.10.20.90 79 13 79 2.77 3.49
1wh3A01 82.30 Cytoplasm59 kDa 2'-5'-oligoadenylate synthetase-like proteinResistance proteinsThyroid hormone receptor bindingDefense related proteins 3.10.20.90 71 14 75 2.51 3.31
2zeqA00 82.21 Protein bindingParkinHeavy metal binding (Cu, Fe, Zn)Neurodegenerative DiseasesProtein metabolic process 3.10.20.90 78 12 79 3.26 4.11
1p1aA00 82.03 NucleusUV excision repair protein RAD23 homolog BSingle-stranded DNA bindingHomo sapiensProtein binding 3.10.20.90 85 16 80 3.20 3.98
1y8rC00 82.01 NucleusDNA repairNuclear poreProtein bindingNegative regulation of transcription 3.10.20.90 84 13 79 2.82 3.56
1wm3A00 82.00 Protein modificationNucleusSmall ubiquitin-related modifier 2 precursorProtein bindingProtein sumoylation 3.10.20.90 72 12 77 2.51 3.26
2he7A01 81.90 Tight junctionIntercellular junctionErythrocyte membrane protein band 4.1Homo sapiensBand 4.1-like protein 3 3.10.20.90 80 11 79 2.17 2.74
2bwfA00 81.88 Ubiquitin domain-containing protein DSK2Protein binding, bridgingSpindle pole body duplication in nuclear envelopeSaccharomyces cerevisiaeER-associated protein catabolic process 3.10.20.90 77 16 78 2.92 3.74
1lfdA00 81.80 Rattus norvegicusRal guanine nucleotide dissociation stimulatorSmall GTPase mediated signal transduction 3.10.20.90 87 6 85 3.05 3.59
1wx9A00 81.34 Large proline-rich protein BAT3Homo sapiensProtein binding 3.10.20.90 86 15 79 3.15 3.97
1t0yA00 81.33 Caenorhabditis elegansTubulin-specific chaperone B 3.10.20.90 90 10 77 2.89 3.72
3dhiC00 81.28 Pseudomonas mendocinaToluene-4-monooxygenase system protein B 3.10.20.270 82 7 81 3.27 4.01
2dziA00 81.25 Small conjugating protein ligase activityHomo sapiensUbiquitin-like protein 4AProtein modification process 3.10.20.90 81 11 79 2.85 3.59
2fazA00 80.91 E3 ubiquitin-protein ligase UHRF1Protein bindingGrowth regulators / regulation of cell sizeHeavy metal binding (Cu, Fe, Zn)Nucleus 3.10.20.90 77 12 80 3.42 4.25
1tkeA01 80.88 Aminoacyl-tRNA biosynthesisGlycine, serine and threonine metabolismThreonyl-tRNA synthetaseThreonyl-tRNA synthetaseEscherichia coli K12 3.10.20.30 64 9 72 2.57 3.55
1m94A00 80.79 Protein modificationCell growth / morphogenesisPheromone response, mating-type determination, sex-specific proteinsProtein bindingNuclear mRNA splicing, via spliceosome 3.10.20.90 73 10 78 2.85 3.65
1tygB00 80.75 3.10.20.30 65 15 66 2.50 3.75
1h8cA00 80.34 Cytoplasmic sequestering of NF-kappaBHeat shock protein bindingHeart muscleFAS-associated factor 1Thymus 3.10.20.90 82 6 78 2.63 3.36
2c60A01 80.31 Mitogen-activated protein kinase kinase kinase 3Mitogen-activated protein kinase kinase kinase 3MAPKKK cascadeProtein bindingPositive regulation of I-kappaB kinase/NF-kappaB cascade 3.10.20.240 77 6 72 2.52 3.48
1wmhA00 80.23 Protein bindingCell-cell junction assembly and maintenanceCa2+ mediated signal transductionProtein amino acid phosphorylationVesicle-mediated transport 3.10.20.240 83 16 77 2.61 3.39
1oqyA01 80.22 Nucleotide-excision repairDNA bindingNucleusUV excision repair protein RAD23 homolog ASingle-stranded DNA binding 3.10.20.90 79 17 82 3.12 3.77
3cwiA00 80.06 Thiamine biosynthesis ThiSGeobacter metallireducens GS-15ThiS, thiamine-biosynthesis 3.10.20.30 67 19 70 2.70 3.85
2fnjB00 79.67 Ubiquitin mediated proteolysisProtein bindingRenal cell carcinomaTranscription elongationNucleus 3.10.20.90 98 8 69 2.89 4.17
1c1yB00 79.59 RAF proto-oncogene serine/threonine-protein kinaseNon-small cell lung cancerProtein bindingCell proliferationErbB signaling pathway 3.10.20.90 77 10 78 2.84 3.63
2rd0A01 79.35 Jak-STAT signaling pathwayNon-small cell lung cancerT cell receptor signaling pathwayErbB signaling pathwayApoptosis 3.10.20.90 100 11 73 3.06 4.19
1v2yA00 79.30 Mus musculusU11/U12 small nuclear ribonucleoprotein 25 kDa protein 3.10.20.90 105 13 69 2.30 3.31
2nptB01 79.17 Mitogen-activated protein kinase kinase kinase 2Mitogen-activated protein kinase kinase kinase 2Gap junctionGnRH signaling pathwayMAPK signaling pathway 3.10.20.240 81 9 74 3.49 4.67
1ip9A00 78.96 Protein bindingMating projection tipBudding, cell polarity and filament formationPheromone response, mating-type determination, sex-specific proteinsCellular morphogenesis during conjugation with cellular fusion 3.10.20.240 85 11 74 2.77 3.71
1v5oA00 78.93 Mus musculusProtein DDI1 homolog 1 3.10.20.90 102 10 71 3.27 4.57
2r2oA00 78.68 Semaphorin receptor bindingPlexin BPlexin-B1 precursorHomo sapiensAxon guidance 3.10.20.90 98 6 72 3.09 4.27
1wxmA01 78.65 A-Raf proto-oncogene serine/threonine-protein kinaseBladder cancerNon-small cell lung cancerAcute myeloid leukemiaProtein binding 3.10.20.90 71 14 74 2.88 3.85
1s3sH00 78.28 Rattus norvegicusGolgi organization and biogenesisNSFL1 cofactor p47Membrane fusion 3.10.20.90 107 6 64 2.03 3.15
2jxxA00 78.13 NFATC2-interacting proteinHomo sapiens 3.10.20.90 78 11 75 3.17 4.18
3d32B00 78.09 Regulation of autophagySynaptic transmissionProtein bindingMicrotubule cytoskeletonActin cytoskeleton 3.10.20.90 116 12 65 3.14 4.79
1uh6A00 78.09 CytoplasmMus musculusProtein modificationUbiquitin-like protein 5Modification by ubiquitination, deubiquitination 3.10.20.90 100 8 68 2.79 4.10
1oeyL00 77.85 3.10.20.240 96 11 72 3.53 4.84
1oeyA00 77.71 Neutrophil cytosolic factor 2Protein C-terminus bindingLeukocyte transendothelial migrationHomo sapiensNeutrophil cytosol factor 2 3.10.20.90 78 11 72 2.64 3.65
1se9A00 77.21 Membrane-anchored ubiquitin-fold protein 1 precursorArabidopsis thaliana 3.10.20.90 101 11 70 3.15 4.48
1j8cA00 77.19 Proteasomal degradation (ubiquitin/proteasomal pathway)Homo sapiensUbiquilin-2 3.10.20.90 103 20 65 2.48 3.81
2zjdA00 76.72 Microtubule cytoskeletonTubulin dependent transportMicrotubule-associated proteins 1A/1B light chain 3B precursorNervous systemIntracellular 3.10.20.90 121 16 63 3.02 4.75
1k8rB00 76.63 Plasma membraneInduction of conjugation upon nitrogen starvationProtein bindingSignal transduction during conjugation with cellular fusionSchizosaccharomyces pombe 3.10.20.90 82 4 71 3.45 4.84
1rwsA00 75.98 Pyrococcus furiosusPutative uncharacterized protein PF1061 3.10.20.30 68 30 72 3.57 4.93
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Displaying entries 1 to 49 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1vjkA00
SVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSWDEELKDGDV
VGVFPPVS
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1vjkA00
AHHHHHHGSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSWD
EELKDGDVVGVFPPVSGG
BLAST against CATH

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Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 19:01

Assigning to "3.10.20.30" based on similarity with "1nviD00" (NWSI: 38.2716049382716, NWO: 82.6530612244898, SPS: 87.38, SPO: 86, RMSD: 1.88)

Flow stage update by auto on 28 Apr 2006 17:50

NW result present for Domain "1vjkA00"

Flow stage update by auto on 28 Apr 2006 17:45

All required files are present for Domain "1vjkA00"

Flow stage update by auto on 27 Apr 2006 17:31

Beginning processing for Domain "1vjkA00"

Insertion by auto on 06 Mar 2006 00:08

Cut based on decision in database "DomChop" on "cathdb"