CATH Domain: 1vj0B01 XML data for domain: 1vj0B01

Molscript image for 1vj0B01
1vj0B01
PDB coordinates for domain 1vj0B01

PDB 1vj0, Chain B, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.90 Alpha-Beta Complex
3.90.180 Quinone Oxidoreductase; Chain A, domain 1
3.90.180.10 Medium-chain alcohol dehydrogenases, catalytic domain Gene3D
3.90.180.10.8
3.90.180.10.8.1
3.90.180.10.8.1.1
3.90.180.10.8.1.1.1
3.90.180.10.8.1.1.1.1

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Segment boundaries for domain 1vj0B01

Chopping figure for domain 1vj0B01
DomainStart PDB ResidueStop PDB Residue
1vj0B01 4 166
1vj0B01 314 367
1vj0B02 167 313

Structural Neighbourhood (9 entries)

There are 9 matching structural neighberhood comparisons for CATH ID 3.90.180.10.8.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 9 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1lluA01 86.66 Tyrosine metabolismFatty acid metabolism1- and 2-Methylnaphthalene degradationMetabolic pathwaysMetabolism of xenobiotics by cytochrome P450 3.90.180.10 203 24 90 1.98 2.18
2xaaC01 85.75 Rhodococcus ruberSecondary alcohol dehydrogenase 3.90.180.10 208 18 90 2.36 2.61
1f8fA01 84.08 Acinetobacter calcoaceticusBenzyl alcohol dehydrogenase 3.90.180.10 225 19 92 2.99 3.25
1piwA01 83.79 NADP-dependent alcohol dehydrogenase 6Alcohol dehydrogenase (NADP+) activityAlcohol metabolic processHydroxymethylfurfural reductase (NADH) activitySoluble fraction 3.90.180.10 223 18 92 3.14 3.38
1yb5A01 80.84 Xenobiotic catabolic processNADPH bindingNADPH2:quinone reductase [EC:1.6.5.5]Visual perceptionHomo sapiens 3.90.180.10 156 21 69 2.36 3.41
1n9gA01 80.49 Candida tropicalisEnoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 2, mitochondrial 3.90.180.10 207 14 78 3.07 3.90
1o89A01 80.30 Putative quinone oxidoreductase yhdHEscherichia coli K-12 3.90.180.10 153 15 69 2.64 3.79
1iz0A01 79.85 NADPH2:quinone reductase [EC:1.6.5.5]Probable quinone oxidoreductaseThermus thermophilus 3.90.180.10 138 19 62 2.13 3.40
1v3vA01 76.84 Cavia porcellusProstaglandin reductase 1 3.90.180.10 155 16 64 2.56 4.00
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Displaying entries 1 to 9 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1vj0B01
LKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPIILGHEGAGRVVEVNGEKRDLNG
ELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKVYGINRGCSEYPHLRGCYSSHIVLDPETDVLKVSEKDDLDVLAM
AMCVSDTSHFVKTVSITSRNYQLLSKLITHRLPLKEANKALELMESREALKVILYPE
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1vj0B01
MGSDKIHHHHHHMMGLKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPIILGHEGA
GRVVEVNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKVYGINRGCSEYPHLRGCYSSHIVLDPETD
VLKVSEKDDLDVLAMAMCVSDTSHFVKTVSITSRNYQLLSKLITHRLPLKEANKALELMESREALKVILYPEG
BLAST against CATH

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Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 18:44

Assigning to "3.90.180.10" based on similarity with "1vj0A01" (NWSI: 100, NWO: 100, SPS: 98.59, SPO: 99, RMSD: 0.19)

Flow stage update by auto on 28 Apr 2006 17:50

NW result present for Domain "1vj0B01"

Flow stage update by auto on 28 Apr 2006 17:44

All required files are present for Domain "1vj0B01"

Flow stage update by auto on 27 Apr 2006 17:31

Beginning processing for Domain "1vj0B01"

Insertion by auto on 09 Mar 2006 01:45

Final ChopClose added based on similarity with "1vj0A" [LEE: 0, LME: 0, MR: 2, LG: 2, SS: 98.49, SI: 100, SO: 100]