CATH Domain: 1vixA02 XML data for domain: 1vixA02

Molscript image for 1vixA02
1vixA02
PDB coordinates for domain 1vixA02

PDB 1vix, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.70 Alpha-Beta Plaits
3.30.70.360 Gene3D
3.30.70.360.1
3.30.70.360.1.2
3.30.70.360.1.2.1
3.30.70.360.1.2.1.1
3.30.70.360.1.2.1.1.1

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Segment boundaries for domain 1vixA02

Chopping figure for domain 1vixA02
DomainStart PDB ResidueStop PDB Residue
1vixA01 -1 207
1vixA01 320 409
1vixA02 208 319

Structural Neighbourhood (21 entries)

There are 21 matching structural neighberhood comparisons for CATH ID 3.30.70.360.1.2.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 21 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1cg2A02 86.47 Pseudomonas sp. RS-16Carboxypeptidase G2 3.30.70.360 110 12 93 2.99 3.19
1z2lA02 85.25 Purine metabolismZinc ion bindingProtein homodimerization activityAllantoate deiminase [EC:3.5.3.9]Manganese ion binding 3.30.70.360 115 9 87 2.48 2.82
2v8hA02 84.88 Beta-alanine synthaseLachancea kluyveri 3.30.70.360 116 9 88 3.17 3.57
1xmbA02 84.73 Auxin metabolic processArabidopsis thalianaIAA-Ala conjugate hydrolase activityIAA-amino acid hydrolase ILR1-like 2 3.30.70.360 101 7 86 3.14 3.64
1vgyA02 84.38 Succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]Neisseria meningitidis serogroup BLysine biosynthesisMetabolic pathwaysSuccinyl-diaminopimelate desuccinylase 3.30.70.360 114 11 91 3.78 4.14
2rb7A02 81.87 Peptidase, M20/M25/M40 familyDesulfovibrio desulfuricans subsp. desulfuricans str. G20 3.30.70.360 98 17 82 3.32 4.02
2epiB00 79.10 Methanocaldococcus jannaschiiUPF0045 protein MJ1052 3.30.70.930 96 5 69 2.65 3.80
2ia0B02 78.52 Pyrococcus furiosusUncharacterized HTH-type transcriptional regulator PF0864 3.30.70.920 99 5 69 2.50 3.59
2nzcA00 78.13 Thermotoga maritimaPutative uncharacterized protein 3.30.70.1150 77 7 69 2.94 4.22
1lxjA00 78.01 CytoplasmNucleusSaccharomyces cerevisiaeUPF0045 protein ECM15Fungal-type cell wall organization 3.30.70.930 101 9 70 3.05 4.32
2iboA00 77.82 Streptococcus pneumoniaePutative uncharacterized protein 3.30.70.930 87 3 68 2.63 3.82
1s99A01 77.72 Bacillus subtilisPutative HMP/thiamine-binding protein ykoF 3.30.70.930 77 3 66 2.39 3.57
1yqhB00 77.59 IG hypothetical 16092Bacillus cereus ATCC 14579 3.30.70.930 98 3 69 3.21 4.60
1nzaA00 77.28 Thermus thermophilus HB8Divalent-cation tolerance protein cutAPeriplasmic divalent cation tolerance protein 3.30.70.830 103 5 68 2.85 4.14
2nuhA00 76.79 Xylella fastidiosaPeriplasmic divalent cation tolerance proteinPeriplasmic divalent cation tolerance protein 3.30.70.830 104 4 69 3.19 4.58
1q5yD00 76.28 CopG family transcriptional regulator, nickel-responsive regulatorNickel-responsive regulatorProtein bindingEscherichia coli K-12 3.30.70.1150 80 7 68 3.11 4.52
3c19A01 75.88 Methanopyrus kandleriUncharacterized conserved protein 3.30.70.1380 98 2 72 3.16 4.36
2bbeA00 75.28 Shewanella oneidensisPutative uncharacterized protein 3.30.70.900 92 9 77 3.66 4.75
2pd1A01 74.82 Nitrosomonas europaeaPutative uncharacterized protein 3.30.70.900 93 8 77 3.75 4.81
2fgcA03 74.21 Butanoate metabolismC5-Branched dibasic acid metabolismPantothenate and CoA biosynthesisValine, leucine and isoleucine biosynthesisMetabolic pathways 3.30.70.1150 74 16 60 2.78 4.59
1vr6A01 73.97 Phenylalanine, tyrosine and tryptophan biosynthesisMetabolic pathwaysThermotoga maritima3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]Phospho-2-dehydro-3-deoxyheptonate aldolase 3.30.70.1140 75 5 64 3.18 4.95
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Displaying entries 1 to 21 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1vixA02
FNAASVNIKIVGNNVHPGTAKGVMVNALSLAARIHAEVPADESPEMTEGYEGFYHLASMKGTVERADMHYIIRDFDRKQF
EARKRKMMEIAKKVGKGLHPDCYIELVIEDSY
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1vixA02
FNAASVNIKIVGNNVHPGTAKGVMVNALSLAARIHAEVPADESPEMTEGYEGFYHLASMKGTVERADMHYIIRDFDRKQF
EARKRKMMEIAKKVGKGLHPDCYIELVIEDSY
BLAST against CATH

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Domain History Events (3)

Insertion by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Flow stage update by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Insertion by auto on 06 Mar 2006 00:07

Cut based on decision in database "DomChop" on "cathdb"