CATH Domain: 1vimA00 XML data for domain: 1vimA00

Molscript image for 1vimA00
1vimA00
PDB coordinates for domain 1vimA00

PDB 1vim, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.10490 Glucose-6-phosphate isomerase like protein; domain 1 Gene3D
3.40.50.10490.3
3.40.50.10490.3.1
3.40.50.10490.3.1.1
3.40.50.10490.3.1.1.1
3.40.50.10490.3.1.1.1.1

[top]
Segment boundaries for domain 1vimA00

Chopping figure for domain 1vimA00
DomainStart PDB ResidueStop PDB Residue
1vimA00 -5 186

Structural Neighbourhood (6 entries)

There are 6 matching structural neighberhood comparisons for CATH ID 3.40.50.10490.3.1.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 6 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1m3sB00 89.53 Bacillus subtilis3-hexulose-6-phosphate isomerasePentose and glucuronate interconversions6-phospho-3-hexuloisomerase [EC:5.3.1.27]Methane metabolism 3.40.50.10490 177 36 91 2.50 2.73
2yvaA00 86.62 DnaA initiator-associating proteinDnaA initiator-associating protein diaAEscherichia coli K-12 3.40.50.10490 193 13 82 2.52 3.04
1j5xA01 82.48 Thermotoga maritimaPutative uncharacterized protein 3.40.50.10490 155 15 77 3.39 4.40
3i0zA02 80.40 Sugar isomerase domain protein AgaSTagatose-6-phosphate ketose/aldose isomerase [EC:5.-.-.-]Streptococcus pneumoniae 3.40.50.10490 175 9 83 4.09 4.91
1nriA00 80.03 Amino sugar and nucleotide sugar metabolismN-acetylmuramic acid 6-phosphate etheraseHaemophilus influenzaeN-acetylmuramic acid 6-phosphate etherase [EC:4.2.-.-] 3.40.50.10490 240 18 72 3.53 4.84
1moqA02 79.55 Amino sugar and nucleotide sugar metabolismMetabolic pathwaysAlanine, aspartate and glutamate metabolismGlucosamine--fructose-6-phosphate aminotransferase (isomerizing) [EC:2.6.1.16]UDP-N-acetylglucosamine biosynthetic process 3.40.50.10490 148 8 72 3.08 4.25
[1]
Displaying entries 1 to 6 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|1vimA00
HGGHMSLLRFLEVVSEHIKNLRNHIDLETVGEMIKLIDSARSIFVIGAGRSGYIAKAFAMRLMHLGYTVYVVGETVTPRI
TDQDVLVGISGSGETTSVVNISKKAKDIGSKLVAVTGKRDSSLAKMADVVMVVKGKMKQERDEILSQLAPLGTMFELTAM
IFLDALVAEIMMQKHLTEKDLEARHAVLEEGG
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|1vimA00
MGHHHHHHGGHMSLLRFLEVVSEHIKNLRNHIDLETVGEMIKLIDSARSIFVIGAGRSGYIAKAFAMRLMHLGYTVYVVG
ETVTPRITDQDVLVGISGSGETTSVVNISKKAKDIGSKLVAVTGKRDSSLAKMADVVMVVKGKMKQERDEILSQLAPLGT
MFELTAMIFLDALVAEIMMQKHLTEKDLEARHAVLEEGGS
BLAST against CATH

[top]
Domain History Events (4)

Flow stage update by cuff on 25 Apr 2006 18:50

COMMENT: Sarah - Scores are quite good FINAL: Lesley - Yes, merge. Very good scores. Chopping looks fine. Move 1940 into 10940.

Set cath from cathlist by auto on 05 Mar 2006 19:21

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:21

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:45

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"