CATH Domain: 1vicA00 XML data for domain: 1vicA00

Molscript image for 1vicA00
1vicA00
PDB coordinates for domain 1vicA00

PDB 1vic, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.90 Alpha-Beta Complex
3.90.550 Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A
3.90.550.10 Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A Gene3D
3.90.550.10.5
3.90.550.10.5.1
3.90.550.10.5.1.1
3.90.550.10.5.1.1.1
3.90.550.10.5.1.1.1.1

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Segment boundaries for domain 1vicA00

Chopping figure for domain 1vicA00
DomainStart PDB ResidueStop PDB Residue
1vicA00 2 256

Structural Neighbourhood (3 entries)

There are 3 matching structural neighberhood comparisons for CATH ID 3.90.550.10.5.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 3 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1eziA00 81.07 Amino sugar and nucleotide sugar metabolismMetabolic pathwaysN-acylneuraminate cytidylyltransferaseN-acylneuraminate cytidylyltransferase [EC:2.7.7.43]Neisseria meningitidis 3.90.550.10 211 18 76 3.31 4.35
1hm9A01 80.84 Amino sugar and nucleotide sugar metabolismBifunctional protein glmUBifunctional protein GlmU [EC:2.7.7.23 2.3.1.157]Metabolic pathwaysStreptococcus pneumoniae 3.90.550.10 246 14 86 3.56 4.11
1e5kA00 77.56 Molybdopterin-guanine dinucleotide biosynthesis protein AEscherichia coli K-12Molybdopterin-guanine dinucleotide biosynthesis protein A 3.90.550.10 188 18 69 3.12 4.49
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Displaying entries 1 to 3 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1vicA00
SFTVIIPARFASSRLPGKPLADIKGKPMIQHVFEKALQSGASRVIIATDNENVADVAKSFGAEVCMTSVNHNSGTERLAE
VVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAVKIHDAEELFNPNAVKVLTDKDGYVLYFSRSVIP
YDRDQFMNLQDVQKVQLSDAYLRHIGIYAYRAGFIKQYVQWAPTQLENLEKLEQLRVLYNGERIHVELAKEVPAVGVDTA
EDLEKVRAILAANGS
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1vicA00
MSFTVIIPARFASSRLPGKPLADIKGKPMIQHVFEKALQSGASRVIIATDNENVADVAKSFGAEVCMTSVNHNSGTERLA
EVVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAVKIHDAEELFNPNAVKVLTDKDGYVLYFSRSVI
PYDRDQFMNLQDVQKVQLSDAYLRHIGIYAYRAGFIKQYVQWAPTQLENLEKLEQLRVLYNGERIHVELAKEVPAVGVDT
AEDLEKVRAILAANGSHHHHHH
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:35

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:35

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:59

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"