CATH Domain: 1vi2A01 XML data for domain: 1vi2A01

Molscript image for 1vi2A01
1vi2A01
PDB coordinates for domain 1vi2A01

PDB 1vi2, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.192 Leucine Dehydrogenase; Chain A, domain 1
3.40.192.10 Leucine Dehydrogenase, chain A, domain 1 Gene3D
3.40.192.10.8
3.40.192.10.8.1
3.40.192.10.8.1.1
3.40.192.10.8.1.1.1
3.40.192.10.8.1.1.1.1

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Segment boundaries for domain 1vi2A01

Chopping figure for domain 1vi2A01
DomainStart PDB ResidueStop PDB Residue
1vi2A01 5 107
1vi2A01 259 288
1vi2A02 108 257

Structural Neighbourhood (1 entries)

There are 1 matching structural neighberhood comparisons for CATH ID 3.40.192.10.8.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 1 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1npyA01 86.33 Shikimate 5-dehydrogenase [EC:1.1.1.25]Haemophilus influenzaePhenylalanine, tyrosine and tryptophan biosynthesisShikimate 5-dehydrogenase-like protein HI_0607Metabolic pathways 3.40.192.10 100 34 72 1.18 1.63
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Displaying entries 1 to 1 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1vi2A01
AKYELIGLAYPIRHSLSPEQNKALEKAGLPFTYAFEVDNDSFPGAIEGLKALKRGTGVSPNKQLACEYVDELTPAAKLVG
AINTIVNDDGYLRGYNTDLLWQGAEQFTLWTGKDFPLEYVKQVGFGA
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1vi2A01
XSLDVTAKYELIGLXAYPIRHSLSPEXQNKALEKAGLPFTYXAFEVDNDSFPGAIEGLKALKXRGTGVSXPNKQLACEYV
DELTPAAKLVGAINTIVNDDGYLRGYNTDLLWQGAEQFTLWTGKDFPLEYVKQVXGFGAEGGSHHHHHH
BLAST against CATH

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Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 18:43

Assigning to "3.40.192.10" based on similarity with "1vi2B01" (NWSI: 95.3020134228188, NWO: 100, SPS: 97.98, SPO: 98, RMSD: 0.33)

Flow stage update by auto on 28 Apr 2006 17:50

NW result present for Domain "1vi2A01"

Flow stage update by auto on 28 Apr 2006 17:44

All required files are present for Domain "1vi2A01"

Flow stage update by auto on 27 Apr 2006 17:31

Beginning processing for Domain "1vi2A01"

Insertion by auto on 09 Mar 2006 01:40

Final ChopClose added based on similarity with "1npdA" [LEE: 1, LME: 0, MR: 3, LG: 3, SS: 94.86, SI: 96.1805555555556, SO: 96]