CATH Domain: 1vhkB00 XML data for domain: 1vhkB00

Molscript image for 1vhkB00
1vhkB00
PDB coordinates for domain 1vhkB00

PDB 1vhk, Chain B, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.1280 Alpha/beta knot
3.40.1280.10 Gene3D
3.40.1280.10.18
3.40.1280.10.18.1
3.40.1280.10.18.1.1
3.40.1280.10.18.1.1.1
3.40.1280.10.18.1.1.1.1

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Segment boundaries for domain 1vhkB00

Chopping figure for domain 1vhkB00
DomainStart PDB ResidueStop PDB Residue
1vhkB00 2 253

Structural Neighbourhood (0 entries)

Sorry, we could not find any non-redundant representatives with similar structural scores to this domain in CATH.


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Domain ATOM Sequence 

>pdb|1vhkB00
QRYFIELTKQIICCSQDGFEAKCCLVIEWTNENRELPIKVYIASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVRER
WTKIAKEAAEQSYRNEVPRVDVHSFQQLLQRQDFDKCVVAYEESSAFSAIVSSLPKGSSLLIVFGPEGGLTEAEVERLTE
QDGVTCGLGPRILRTETAPLYALSAISYQTELLR
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1vhkB00
XSLQRYFIELTKQQIEEAPTFSITGEEVHHIVNVXRXNEGDQIICCSQDGFEAKCELQSVSKDKVSCLVIEWTNENRELP
IKVYIASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKLDDKKAKKKRERWTKIAKEAAEQSYRNEVPRVXDVHSFQ
QLLQRXQDFDKCVVAYEESSKQGEISAFSAIVSSLPKGSSLLIVFGPEGGLTEAEVERLTEQDGVTCGLGPRILRTETAP
LYALSAISYQTELLRGDQEGGSHHHHHH
BLAST against CATH

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Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 18:44

Assigning to "3.40.1280.10" based on similarity with "1vhkD00" (NWSI: 98.7068965517241, NWO: 86.5671641791045, SPS: 95.15, SPO: 90, RMSD: 0.97)

Flow stage update by auto on 28 Apr 2006 17:50

NW result present for Domain "1vhkB00"

Flow stage update by auto on 28 Apr 2006 17:44

All required files are present for Domain "1vhkB00"

Flow stage update by auto on 27 Apr 2006 17:31

Beginning processing for Domain "1vhkB00"

Insertion by auto on 09 Mar 2006 01:44

Final ChopClose added based on similarity with "1vhkD" [LEE: 0, LME: 0, MR: 0, LG: 10, SS: 95.15, SI: 98.7068965517241, SO: 86.5671641791045]