CATH Domain: 1vhkA02 XML data for domain: 1vhkA02

Molscript image for 1vhkA02
1vhkA02
PDB coordinates for domain 1vhkA02

PDB 1vhk, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.1280 Alpha/beta knot
3.40.1280.10 Gene3D
3.40.1280.10.15
3.40.1280.10.15.1
3.40.1280.10.15.1.1
3.40.1280.10.15.1.1.1
3.40.1280.10.15.1.1.1.1

[top]
Segment boundaries for domain 1vhkA02

Chopping figure for domain 1vhkA02
DomainStart PDB ResidueStop PDB Residue
1vhkA01 2 74
1vhkA02 75 253

Structural Neighbourhood (2 entries)

There are 2 matching structural neighberhood comparisons for CATH ID 3.40.1280.10.15.1.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 2 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1vhkB00 93.31 Bacillus subtilisRibosomal RNA small subunit methyltransferase ERibosomal RNA small subunit methyltransferase E [EC:2.1.1.-] 3.40.1280.10 194 99 81 0.36 0.44
1k3rA01 77.99 Hypothetical proteinMethanothermobacter thermautotrophicus str. Delta HConserved protein 3.40.1280.10 191 15 75 3.27 4.31
[1]
Displaying entries 1 to 2 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|1vhkA02
RELPIKVYIASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKRERWTKIAKEAAEQSYRNEVPRVDVHSFQQLLQRQ
DFDKCVVAYESAFSAIVSSLPKGSSLLIVFGPEGGLTEAEVERLTEQDGVTCGLGPRILRTETAPLYALSAISYQTELLR
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|1vhkA02
RELPIKVYIASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKLDDKKAKKKRERWTKIAKEAAEQSYRNEVPRVXDV
HSFQQLLQRXQDFDKCVVAYEESSKQGEISAFSAIVSSLPKGSSLLIVFGPEGGLTEAEVERLTEQDGVTCGLGPRILRT
ETAPLYALSAISYQTELLRGDQEGGSHHHHHH
BLAST against CATH

[top]
Domain History Events (3)

Insertion by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Flow stage update by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Insertion by auto on 06 Mar 2006 00:07

Cut based on decision in database "DomChop" on "cathdb"