CATH Domain: 1vheA01 XML data for domain: 1vheA01

Molscript image for 1vheA01
1vheA01
PDB coordinates for domain 1vheA01

PDB 1vhe, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.630 Aminopeptidase
3.40.630.10 Zn peptidases Gene3D
3.40.630.10.11
3.40.630.10.11.1
3.40.630.10.11.1.1
3.40.630.10.11.1.1.1
3.40.630.10.11.1.1.1.1

Segment boundaries for domain 1vheA01

Chopping figure for domain 1vheA01
DomainStart PDB ResidueStop PDB Residue
1vheA01 3 74
1vheA01 165 367
1vheA02 77 164

Structural Neighbourhood (16 entries)

There are 16 matching structural neighberhood comparisons for CATH ID 3.40.630.10.11.1.1.1.1 (SIMAX score < 5)

Displaying entries 1 to 16 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1yloA01 89.83 Shigella flexneriPutative uncharacterized protein 3.40.630.10 254 34 94 2.02 2.15
1vhoA01 86.84 Endoglucanase [EC:3.2.1.4]Thermotoga maritimaStarch and sucrose metabolismEndoglucanase 3.40.630.10 237 34 86 2.73 3.17
2cf4A01 86.47 Pyrococcus horikoshiiPutative uncharacterized protein PH0519 3.40.630.10 236 33 86 1.78 2.07
3cpxB01 85.73 Aminopeptidase, M42 familyCytophaga hutchinsonii ATCC 33406 3.40.630.10 243 20 83 2.45 2.92
2greA01 83.78 Aminopeptidase [EC:3.4.11.-]Deblocking aminopeptidaseBacillus cereus ATCC 14579 3.40.630.10 233 18 84 2.66 3.14
1cg2A01 82.66 Pseudomonas sp. RS-16Carboxypeptidase G2 3.40.630.10 279 16 84 2.91 3.44
2qyvA01 81.38 Arginine and proline metabolismGlutathione metabolismHistidine metabolismMetabolic pathwaysXaa-His dipeptidase. Metallo peptidase. MEROPS family M20C 3.40.630.10 250 17 84 2.98 3.52
1xmbA01 81.37 Auxin metabolic processArabidopsis thalianaIAA-Ala conjugate hydrolase activityIAA-amino acid hydrolase ILR1-like 2 3.40.630.10 274 10 85 2.90 3.41
3ct9B01 81.11 Bacteroides thetaiotaomicronAcetylornithine deacetylase 3.40.630.10 233 15 80 3.23 4.03
1z2lB01 80.80 Purine metabolismZinc ion bindingProtein homodimerization activityAllantoate deiminase [EC:3.5.3.9]Manganese ion binding 3.40.630.10 295 15 77 2.88 3.73
1vgyA01 80.47 Succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]Neisseria meningitidis serogroup BLysine biosynthesisMetabolic pathwaysSuccinyl-diaminopimelate desuccinylase 3.40.630.10 256 13 86 3.21 3.71
2glfA01 80.33 Thermotoga maritimaProbable M18 family aminopeptidase 1 3.40.630.10 304 14 76 2.74 3.59
2ijzA01 79.89 Aminopeptidase [EC:3.4.11.-]Pseudomonas aeruginosaProbable M18 family aminopeptidase 2 3.40.630.10 272 9 87 2.84 3.26
2v8hA01 78.78 Beta-alanine synthaseLachancea kluyveri 3.40.630.10 315 17 75 3.30 4.39
3kasA01 78.30 Integral to plasma membraneHematopoietic cell lineageExtracellular regionCoated pitEndocytosis 3.40.630.10 308 12 74 3.61 4.86
2rb7A01 77.54 Peptidase, M20/M25/M40 familyDesulfovibrio desulfuricans subsp. desulfuricans str. G20 3.40.630.10 231 14 76 3.45 4.49
Displaying entries 1 to 16 (page 1 of 1)


Domain ATOM Sequence

>pdb|1vheA01
KLDETLTLKDLTDAKGIPGNEREVRQVKSYIEPFADEVTTDRLGSLIAKKTGAENGPKIIAGHLDEVGFFEFTVNNEKFL
LAKAWDNRIGCAIAIDVLRNLQNTDHPNIVYGVGTVQEEVGLRGAKTAAHTIQPDIAFGVDVGIAGDTPGISEKEAQSKG
KGPQIIVYDASVSHKGLRDAVVATAEEAGIPYQFDAIAGGGTDSGAIHLTANGVPALSITIATRYIHTHAALHRDDYENA
VKLITEVIKKLDRKTVDEITYQEGGSHH    

Domain COMBS Sequence

>pdb|1vheA01
XSLAKLDETLTXLKDLTDAKGIPGNEREVRQVXKSYIEPFADEVTTDRLGSLIAKKTGAENGPKIXIAGHLDEVGFFEFT
VXNNEKFLLAKAWDNRIGCAIAIDVLRNLQNTDHPNIVYGVGTVQEEVGLRGAKTAAHTIQPDIAFGVDVGIAGDTPGIS
EKEAQSKXGKGPQIIVYDASXVSHKGLRDAVVATAEEAGIPYQFDAIAGGGTDSGAIHLTANGVPALSITIATRYIHTHA
AXLHRDDYENAVKLITEVIKKLDRKTVDEITYQEGGSHHHHHH    

Domain History Events (3)

Insertion by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Flow stage update by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Insertion by auto on 06 Mar 2006 00:07

Cut based on decision in database "DomChop" on "cathdb"