CATH Domain: 1vgyA02 XML data for domain: 1vgyA02

Molscript image for 1vgyA02
1vgyA02
PDB coordinates for domain 1vgyA02

PDB 1vgy, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.70 Alpha-Beta Plaits
3.30.70.360 Gene3D
3.30.70.360.3
3.30.70.360.3.1
3.30.70.360.3.1.1
3.30.70.360.3.1.1.1
3.30.70.360.3.1.1.1.1

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Segment boundaries for domain 1vgyA02

Chopping figure for domain 1vgyA02
DomainStart PDB ResidueStop PDB Residue
1vgyA01 2 179
1vgyA01 294 376
1vgyA02 180 293

Structural Neighbourhood (19 entries)

There are 19 matching structural neighberhood comparisons for CATH ID 3.30.70.360.3.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 19 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1cg2A02 87.60 Pseudomonas sp. RS-16Carboxypeptidase G2 3.30.70.360 110 12 92 1.99 2.14
3ct9A02 87.32 Bacteroides thetaiotaomicronAcetylornithine deacetylase 3.30.70.360 104 18 91 1.82 2.00
2v8hA02 85.43 Beta-alanine synthaseLachancea kluyveri 3.30.70.360 116 15 92 2.46 2.67
1z2lA02 85.11 Purine metabolismZinc ion bindingProtein homodimerization activityAllantoate deiminase [EC:3.5.3.9]Manganese ion binding 3.30.70.360 115 12 94 2.63 2.77
1xmbA02 83.94 Auxin metabolic processArabidopsis thalianaIAA-Ala conjugate hydrolase activityIAA-amino acid hydrolase ILR1-like 2 3.30.70.360 101 21 81 2.54 3.11
1lfwA02 81.96 Lactobacillus delbrueckii subsp. lactisBeta-Ala-Xaa dipeptidase 3.30.70.360 106 10 86 3.03 3.49
2pokA02 78.34 Lysine biosynthesisMetabolic pathwaysSuccinyl-diaminopimelate desuccinylase [EC:3.5.1.18]Peptidase, M20/M25/M40 familyStreptococcus pneumoniae 3.30.70.360 170 19 66 2.60 3.91
1vk8A00 76.70 Thermotoga maritimaPutative uncharacterized protein 3.30.70.930 91 6 66 2.80 4.20
2hiyB01 76.60 Streptococcus pneumoniaePutative uncharacterized protein 3.30.70.1280 87 10 68 3.07 4.49
1lxjA00 76.12 CytoplasmNucleusSaccharomyces cerevisiaeUPF0045 protein ECM15Fungal-type cell wall organization 3.30.70.930 101 5 67 3.09 4.57
1q8kA03 76.11 Translation initiation factor activityTranslation initiation factor eIF-2 alpha subunitEukaryotic translation initiation factor 2 subunit 1PolysomeHomo sapiens 3.30.70.1130 116 4 75 3.47 4.63
2pd1A01 75.94 Nitrosomonas europaeaPutative uncharacterized protein 3.30.70.900 93 11 72 3.18 4.37
2iboA00 75.62 Streptococcus pneumoniaePutative uncharacterized protein 3.30.70.930 87 3 64 3.01 4.64
2epiB00 75.56 Methanocaldococcus jannaschiiUPF0045 protein MJ1052 3.30.70.930 96 3 66 3.20 4.80
1x7vC00 75.18 Pseudomonas aeruginosaPutative uncharacterized protein 3.30.70.900 97 4 75 3.52 4.67
2od4B01 74.50 3.30.70.900 81 8 66 3.24 4.86
1s99A01 74.46 Bacillus subtilisPutative HMP/thiamine-binding protein ykoF 3.30.70.930 77 7 64 2.98 4.59
1s99A02 73.82 Bacillus subtilisPutative HMP/thiamine-binding protein ykoF 3.30.70.930 81 6 59 2.96 4.96
1vr6A01 73.30 Phenylalanine, tyrosine and tryptophan biosynthesisMetabolic pathwaysThermotoga maritima3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]Phospho-2-dehydro-3-deoxyheptonate aldolase 3.30.70.1140 75 5 64 3.14 4.84
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Displaying entries 1 to 19 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1vgyA02
RGSLSGNLTVKGKQGHIAYPHLAINPVHTFAPALLELTQEVWDEGNEYFPPTSFQISNINGGTGATNVIPGELNVKFNFR
FSTESTEAGLKQRVHAILDKHGVQYDLQWSCSGQ
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1vgyA02
RGSLSGNLTVKGKQGHIAYPHLAINPVHTFAPALLELTQEVWDEGNEYFPPTSFQISNINGGTGATNVIPGELNVKFNFR
FSTESTEAGLKQRVHAILDKHGVQYDLQWSCSGQ
BLAST against CATH

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Domain History Events (3)

Insertion by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Flow stage update by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Insertion by auto on 06 Mar 2006 00:07

Cut based on decision in database "DomChop" on "cathdb"