CATH Domain: 1vgyA01 XML data for domain: 1vgyA01

Molscript image for 1vgyA01
1vgyA01
PDB coordinates for domain 1vgyA01

PDB 1vgy, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.630 Aminopeptidase
3.40.630.10 Zn peptidases Gene3D
3.40.630.10.15
3.40.630.10.15.1
3.40.630.10.15.1.1
3.40.630.10.15.1.1.1
3.40.630.10.15.1.1.1.1

Segment boundaries for domain 1vgyA01

Chopping figure for domain 1vgyA01
DomainStart PDB ResidueStop PDB Residue
1vgyA01 2 179
1vgyA01 294 376
1vgyA02 180 293

Structural Neighbourhood (12 entries)

There are 12 matching structural neighberhood comparisons for CATH ID 3.40.630.10.15.1.1.1.1 (SIMAX score < 5)

Displaying entries 1 to 12 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
3ct9B01 85.47 Bacteroides thetaiotaomicronAcetylornithine deacetylase 3.40.630.10 233 21 87 2.27 2.61
1cg2A01 83.41 Pseudomonas sp. RS-16Carboxypeptidase G2 3.40.630.10 279 21 88 2.53 2.87
2qyvA01 83.01 Arginine and proline metabolismGlutathione metabolismHistidine metabolismMetabolic pathwaysXaa-His dipeptidase. Metallo peptidase. MEROPS family M20C 3.40.630.10 250 16 90 3.02 3.35
2greA01 80.79 Aminopeptidase [EC:3.4.11.-]Deblocking aminopeptidaseBacillus cereus ATCC 14579 3.40.630.10 233 14 86 3.22 3.71
3cpxB01 80.60 Aminopeptidase, M42 familyCytophaga hutchinsonii ATCC 33406 3.40.630.10 243 14 87 3.81 4.35
1yloA01 80.09 Shigella flexneriPutative uncharacterized protein 3.40.630.10 254 14 86 2.91 3.36
2cf4A01 79.71 Pyrococcus horikoshiiPutative uncharacterized protein PH0519 3.40.630.10 236 16 87 2.98 3.42
1vhoA01 79.46 Endoglucanase [EC:3.2.1.4]Thermotoga maritimaStarch and sucrose metabolismEndoglucanase 3.40.630.10 237 12 85 3.38 3.95
1z2lB01 78.74 Purine metabolismZinc ion bindingProtein homodimerization activityAllantoate deiminase [EC:3.5.3.9]Manganese ion binding 3.40.630.10 295 11 78 3.27 4.18
2glfA01 77.92 Thermotoga maritimaProbable M18 family aminopeptidase 1 3.40.630.10 304 13 72 3.04 4.20
2ijzA01 77.59 Aminopeptidase [EC:3.4.11.-]Pseudomonas aeruginosaProbable M18 family aminopeptidase 2 3.40.630.10 272 8 83 3.24 3.88
3kasA01 76.79 Integral to plasma membraneHematopoietic cell lineageExtracellular regionCoated pitEndocytosis 3.40.630.10 308 7 73 2.98 4.08
Displaying entries 1 to 12 (page 1 of 1)


Domain ATOM Sequence

>pdb|1vgyA01
TETQSLELAKELISRPSVTPDDRDCQKLAERLHKIGFAAEEHFGNTKNIWLRRGTKAPVVCFAGHTDVVPTGPVEKWDSP
PFEPAERDGRLYGRGAADKTSIACFVTACERFVAKHPNHQGSIALLITSDEEGDALDGTTKVVDVLKARDELIDYCIVGE
PTAVDKLGDIKNGRPFLTQAGKLTDVARAAIAETCGIEAELSTTGGTSDGRFIKAAQELIELGPSNATIHQINENVRLND
IPKLSAVYEGILVRLL    

Domain COMBS Sequence

>pdb|1vgyA01
XSLTETQSLELAKELISRPSVTPDDRDCQKLXAERLHKIGFAAEEXHFGNTKNIWLRRGTKAPVVCFAGHTDVVPTGPVE
KWDSPPFEPAERDGRLYGRGAADXKTSIACFVTACERFVAKHPNHQGSIALLITSDEEGDALDGTTKVVDVLKARDELID
YCIVGEPTAVDKLGDXIKNGRPFLTQAGKLTDVARAAIAETCGIEAELSTTGGTSDGRFIKAXAQELIELGPSNATIHQI
NENVRLNDIPKLSAVYEGILVRLLAGNAVEGGSHHHHHH    

Domain History Events (3)

Insertion by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Flow stage update by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Insertion by auto on 06 Mar 2006 00:07

Cut based on decision in database "DomChop" on "cathdb"