CATH Domain: 1vfrA00 XML data for domain: 1vfrA00

Molscript image for 1vfrA00
1vfrA00
PDB coordinates for domain 1vfrA00

PDB 1vfr, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.109 NADH Oxidase
3.40.109.10 NADH Oxidase Gene3D
3.40.109.10.5
3.40.109.10.5.1
3.40.109.10.5.1.1
3.40.109.10.5.1.1.1
3.40.109.10.5.1.1.1.1

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Segment boundaries for domain 1vfrA00

Chopping figure for domain 1vfrA00
DomainStart PDB ResidueStop PDB Residue
1vfrA00 2 218

Structural Neighbourhood (6 entries)

There are 6 matching structural neighberhood comparisons for CATH ID 3.40.109.10.5.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 6 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2hayC00 85.37 [EC:1.-.-.-]NAD(P)H-dependent quinone reductaseStreptococcus pyogenes serotype M1 3.40.109.10 209 26 89 2.39 2.66
2h0uA00 84.39 NAD(P)H-flavin oxidoreductase[EC:1.-.-.-]Helicobacter pylori 3.40.109.10 187 24 80 2.74 3.40
2b67A00 83.55 [EC:1.-.-.-]Nitroreductase family proteinStreptococcus pneumoniae 3.40.109.10 198 18 91 2.36 2.59
2freA00 81.23 NAD(P)H-flavin oxidoreductaseAgrobacterium tumefaciens str. C58 3.40.109.10 195 16 80 3.06 3.82
2r01A01 79.48 Chlorobaculum tepidumNitroreductase family protein 3.40.109.10 149 12 66 3.23 4.83
2i7hA00 78.64 Nitroreductase familyBacillus cereus ATCC 14579 3.40.109.10 183 14 76 3.19 4.17
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Displaying entries 1 to 6 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1vfrA00
THPIIHDLENRYTSKKYDPSKKVSQEDLAVLLEALRLSASSINSQPWKFIVIESDAAKQRMHDSFANMHQFNQPHIKACS
HVILFANKLSYTRDDYDVVLSKAVADKRITEEQKEAAFASFKFVELNCDENGEHKAWTKPQAYLALGNALHTLARLNIDS
TTMEGIDPELLSEIFADELKGYECHVALAIGYHHPSEDYNASLPKSRKAFEDVITIL
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1vfrA00
MTHPIIHDLENRYTSKKYDPSKKVSQEDLAVLLEALRLSASSINSQPWKFIVIESDAAKQRMHDSFANMHQFNQPHIKAC
SHVILFANKLSYTRDDYDVVLSKAVADKRITEEQKEAAFASFKFVELNCDENGEHKAWTKPQAYLALGNALHTLARLNID
STTMEGIDPELLSEIFADELKGYECHVALAIGYHHPSEDYNASLPKSRKAFEDVITIL
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:24

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:24

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:47

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"