CATH Domain: 1vflA00 XML data for domain: 1vflA00

Molscript image for 1vflA00
1vflA00
PDB coordinates for domain 1vflA00

PDB 1vfl, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.20 Alpha-Beta Barrel
3.20.20 TIM Barrel
3.20.20.140 Metal-dependent hydrolases Gene3D
3.20.20.140.8
3.20.20.140.8.1
3.20.20.140.8.1.2
3.20.20.140.8.1.2.1
3.20.20.140.8.1.2.1.1

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Segment boundaries for domain 1vflA00

Chopping figure for domain 1vflA00
DomainStart PDB ResidueStop PDB Residue
1vflA00 1 349

Structural Neighbourhood (6 entries)

There are 6 matching structural neighberhood comparisons for CATH ID 3.20.20.140.8.1.2.1.1 (SIMAX score < 5)

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Displaying entries 1 to 6 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1p1mA02 75.77 Thermotoga maritima5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.- 3.5.4.28]5-methylthioadenosine/S-adenosylhomocysteine deaminase 3.20.20.140 281 13 72 3.10 4.29
2i9uA02 75.51 Cytosine/guanine deaminase related proteinGuanine deaminase [EC:3.5.4.3]Purine metabolismMetabolic pathwaysClostridium acetobutylicum 3.20.20.140 308 12 73 3.09 4.20
2pajA02 74.30 3.20.20.140 276 13 67 3.23 4.79
2oodA02 74.24 Bradyrhizobium japonicumGuanine deaminase [EC:3.5.4.3]Purine metabolismBlr3880 proteinMetabolic pathways 3.20.20.140 318 10 73 3.48 4.73
2qt3A02 74.12 N-isopropylammelide isopropyl amidohydrolasePseudomonas sp. ADP 3.20.20.140 301 12 75 3.48 4.59
3feqC02 73.05 3.20.20.140 299 9 67 3.25 4.81
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Displaying entries 1 to 6 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1vflA00
TPAFDKPKVELHVHLDGAIKPETILYYGKRRGIALPADTPEELQNIIGMDKPLTLPDFLAKFDYYMPAIAGCRDAIKRIA
YEFVEMKAKDGVVYVEVRYSPHLLANSKVEPIPWNQAEGDLTPDEVVSLVNQGLQEGERDFGVKVRSILCCMRHQPSWSS
EVVELCKKYREQTVVAIDLAGDETIEGSSLFPGHVQAYAEAVKSGVHRTVHAGEVGSANVVKEAVDTLKTERLGHGYHTL
EDTTLYNRLRQENMHFEICPWSSYLTGAWKPDTEHAVIRFKNDQVNYSLNTDDPLIFKSTLDTDYQMTKKDMGFTEEEFK
RLNINAAKSSFLPEDEKKELLDLLYKAYR
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1vflA00
AQTPAFDKPKVELHVHLDGAIKPETILYYGKRRGIALPADTPEELQNIIGMDKPLTLPDFLAKFDYYMPAIAGCRDAIKR
IAYEFVEMKAKDGVVYVEVRYSPHLLANSKVEPIPWNQAEGDLTPDEVVSLVNQGLQEGERDFGVKVRSILCCMRHQPSW
SSEVVELCKKYREQTVVAIDLAGDETIEGSSLFPGHVQAYAEAVKSGVHRTVHAGEVGSANVVKEAVDTLKTERLGHGYH
TLEDTTLYNRLRQENMHFEICPWSSYLTGAWKPDTEHAVIRFKNDQVNYSLNTDDPLIFKSTLDTDYQMTKKDMGFTEEE
FKRLNINAAKSSFLPEDEKKELLDLLYKAYRMPSPA
BLAST against CATH

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Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 19:13

Assigning to "3.20.20.140" based on similarity with "1umlA00" (NWSI: 100, NWO: 100, SPS: 95.63, SPO: 100, RMSD: 0.49)

Flow stage update by auto on 28 Apr 2006 17:50

NW result present for Domain "1vflA00"

Flow stage update by auto on 28 Apr 2006 17:45

All required files are present for Domain "1vflA00"

Flow stage update by auto on 27 Apr 2006 17:31

Beginning processing for Domain "1vflA00"

Insertion by auto on 09 Mar 2006 06:28

Final ChopClose added based on similarity with "1o5rA" [LEE: 0, LME: 0, MR: 0, LG: 0, SS: 94.77, SI: 100, SO: 100]