CATH Domain: 1vf8A01 XML data for domain: 1vf8A01

Molscript image for 1vf8A01
1vf8A01
PDB coordinates for domain 1vf8A01

PDB 1vf8, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.20 Alpha-Beta Barrel
3.20.20 TIM Barrel
3.20.20.80 Glycosidases Gene3D
3.20.20.80.24
3.20.20.80.24.1
3.20.20.80.24.1.1
3.20.20.80.24.1.1.1
3.20.20.80.24.1.1.1.1

[top]
Segment boundaries for domain 1vf8A01

Chopping figure for domain 1vf8A01
DomainStart PDB ResidueStop PDB Residue
1vf8A01 1 244
1vf8A01 316 373
1vf8A02 245 315

Structural Neighbourhood (8 entries)

There are 8 matching structural neighberhood comparisons for CATH ID 3.20.20.80.24.1.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 8 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1w9pA01 86.40 Amino sugar and nucleotide sugar metabolismChitinaseChitinase [EC:3.2.1.14]Aspergillus fumigatus 3.20.20.80 332 26 85 2.31 2.69
3fndA01 83.95 ChitinaseBacteroides thetaiotaomicron 3.20.20.80 261 19 84 3.08 3.63
1eokA00 79.06 Endo-beta-N-acetylglucosaminidase F3Elizabethkingia meningoseptica 3.20.20.80 282 10 76 2.96 3.89
1edtA00 78.57 Endo-beta-N-acetylglucosaminidase HStreptomyces plicatus 3.20.20.80 265 13 77 3.75 4.86
1cnvA00 78.52 Concanavalin BCanavalia ensiformis 3.20.20.80 283 11 79 3.29 4.14
1ta3A00 77.78 Triticum aestivumXylanase inhibitor protein 1 3.20.20.80 274 13 79 3.18 4.00
1narA00 77.63 NarboninVicia narbonensis 3.20.20.80 289 12 85 3.30 3.86
2uy2A00 77.50 Amino sugar and nucleotide sugar metabolismChitinase [EC:3.2.1.14]Endochitinase activityExtracellular regionFungal-type cell wall 3.20.20.80 287 12 80 3.46 4.32
[1]
Displaying entries 1 to 8 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|1vf8A01
YQLMCYYTSWAKDRPIEGSFKPGNIDPCLCTHLIYAFAGMQNNEITYTHEQDLRDYEALNGLKDKNTELKTLLAIGGWKF
GPAPFSAMVSTPQNRQIFIQSVIRFLRQYNFDGLNLDWQYPGSRGSPPKDKHLFSVLVKEMRKAFEEESVEKDIPRLLLT
STGAGIIDVIKSGYKIPELSQSLDYIQVMTYDLHDPKDGYTGENSPLYKSPYDIGKSADLNVDSIISYWKDHGAASEKLI
VGFPDNVRSFKLKAQWLKDNNLGGAVVWPLDMDDFSGSFCHQRHFPLTSTLKGDLNIHSASC
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|1vf8A01
YQLMCYYTSWAKDRPIEGSFKPGNIDPCLCTHLIYAFAGMQNNEITYTHEQDLRDYEALNGLKDKNTELKTLLAIGGWKF
GPAPFSAMVSTPQNRQIFIQSVIRFLRQYNFDGLNLDWQYPGSRGSPPKDKHLFSVLVKEMRKAFEEESVEKDIPRLLLT
STGAGIIDVIKSGYKIPELSQSLDYIQVMTYDLHDPKDGYTGENSPLYKSPYDIGKSADLNVDSIISYWKDHGAASEKLI
VGFPDNVRSFKLKAQWLKDNNLGGAVVWPLDMDDFSGSFCHQRHFPLTSTLKGDLNIHSASCKGPY
BLAST against CATH

[top]
Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 19:12

Assigning to "3.20.20.80" based on similarity with "1e9lA01" (NWSI: 100, NWO: 100, SPS: 96.39, SPO: 99, RMSD: 0.57)

Flow stage update by auto on 28 Apr 2006 17:50

NW result present for Domain "1vf8A01"

Flow stage update by auto on 28 Apr 2006 17:45

All required files are present for Domain "1vf8A01"

Flow stage update by auto on 27 Apr 2006 17:31

Beginning processing for Domain "1vf8A01"

Insertion by auto on 09 Mar 2006 06:21

Final ChopClose added based on similarity with "1e9lA" [LEE: 1, LME: 0, MR: 0, LG: 1, SS: 96.22, SI: 100, SO: 100]