CATH Domain: 1vf1A01 XML data for domain: 1vf1A01

Molscript image for 1vf1A01
1vf1A01
PDB coordinates for domain 1vf1A01

PDB 1vf1, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.30 Glutaredoxin
3.40.30.10 Glutaredoxin Gene3D
3.40.30.10.20
3.40.30.10.20.1
3.40.30.10.20.1.1
3.40.30.10.20.1.1.1
3.40.30.10.20.1.1.1.1

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Segment boundaries for domain 1vf1A01

Chopping figure for domain 1vf1A01
DomainStart PDB ResidueStop PDB Residue
1vf1A01 3 81
1vf1A01 191 228
1vf1A02 82 190

Structural Neighbourhood (15 entries)

There are 15 matching structural neighberhood comparisons for CATH ID 3.40.30.10.20.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 15 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1b4pA01 85.94 Rattus norvegicusPlasma membraneSoluble fractionGlutathione S-transferase Mu 2Glutathione transferase activity 3.40.30.10 112 24 85 2.25 2.63
1tu7A01 85.91 Onchocerca volvulusGlutathione S-transferase 2 3.40.30.10 99 26 84 3.10 3.66
2a2rA01 85.83 Anti-apoptosisPathways in cancerCentral nervous system developmentGlutathione S-transferase PGlutathione metabolism 3.40.30.10 101 24 83 2.51 3.00
2gsqA01 85.81 Ommastrephes sloaniGlutathione S-transferase 3.40.30.10 94 29 77 1.85 2.38
1oktA01 85.26 Glutathione S-transferase [EC:2.5.1.18]Metabolism of xenobiotics by cytochrome P450Glutathione S-transferaseGlutathione metabolismPlasmodium falciparum 3.40.30.10 85 31 67 1.43 2.12
2cvdA01 84.80 Prostaglandin-D synthase activityArachidonic acid metabolismProstaglandin-H2 D-isomerase [EC:5.3.99.2]Metabolic pathwaysCytoplasm 3.40.30.10 90 30 76 2.08 2.73
2wb9A01 82.68 Fasciola hepaticaGlutathione transferase sigma class 3.40.30.10 82 26 64 1.64 2.56
2cz2A01 80.80 Tyrosine metabolismGlutathione transferase activityGlutathione metabolismMetabolic pathwaysGlutathione S-transferase [EC:2.5.1.18] 3.40.30.10 76 27 60 2.16 3.56
2c3nA01 80.49 Soluble fractionGlutathione S-transferase theta-1Glutathione metabolic processGlutathione transferase activityGlutathione metabolism 3.40.30.10 79 17 65 2.41 3.66
3f6fA01 80.31 Glutathione S-transferase [EC:2.5.1.18]Drug metabolism - cytochrome P450Metabolism of xenobiotics by cytochrome P450Glutathione S transferase D10Glutathione transferase activity 3.40.30.10 78 25 64 2.12 3.26
3cbuA01 79.64 Glutathione S-transferase [EC:2.5.1.18]Ralstonia eutropha JMP134Metabolism of xenobiotics by cytochrome P450Probable gst-related proteinGlutathione metabolism 3.40.30.10 75 20 61 2.76 4.49
3lgcA00 77.83 Francisella tularensis subsp. tularensisGlutaredoxin 1Glutaredoxin 1 3.40.30.10 86 16 68 3.11 4.55
1abaA00 77.24 Enterobacteria phage T4Glutaredoxin 3.40.30.10 87 13 62 2.67 4.28
1nm3A02 77.13 Peroxiredoxin (alkyl hydroperoxide reductase subunit C) [EC:1.11.1.15]Haemophilus influenzaeHybrid peroxiredoxin hyPrx5 3.40.30.10 70 20 59 2.45 4.09
1egoA00 76.63 Glutaredoxin 1Glutaredoxin-1Protein bindingEscherichia coli K-12 3.40.30.10 85 10 67 2.81 4.16
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Displaying entries 1 to 15 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1vf1A01
AKPVLYYFNGRGKMESIRWLLAAAGVEFEEVFLETREQYEKLLQSGILMFQQVPMVEIDGMKLVQTRAILNYIAGKYNLI
PTIKKFLAPGSKRKPISDDKYVETVRRVLRMYYDVKP
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1vf1A01
MAAKPVLYYFNGRGKMESIRWLLAAAGVEFEEVFLETREQYEKLLQSGILMFQQVPMVEIDGMKLVQTRAILNYIAGKYN
LIPTIKKFLAPGSKRKPISDDKYVETVRRVLRMYYDVKPH
BLAST against CATH

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Domain History Events (6)

Domain assigned by auto on 22 Dec 2006 11:43

Assigning to "3.40.30.10" based on similarity with "1gukA01"

Flow stage update by auto on 22 Dec 2006 11:40

No in_process hits for Domain "1vf1A01" ready to be processed

Flow stage update by auto on 22 Dec 2006 11:40

NW result present for Domain "1vf1A01"

Flow stage update by auto on 21 Dec 2006 15:34

All required files are present for Domain "1vf1A01"

Flow stage update by auto on 21 Dec 2006 15:34

Beginning processing for Domain "1vf1A01"

Insertion by cuff on 21 Dec 2006 11:59

nice selection of choppings