CATH Domain: 1vetB00 XML data for domain: 1vetB00

Molscript image for 1vetB00
1vetB00
PDB coordinates for domain 1vetB00

PDB 1vet, Chain B, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.450 Beta-Lactamase
3.30.450.30 Dynein light chain 2a, cytoplasmic Gene3D
3.30.450.30.6
3.30.450.30.6.1
3.30.450.30.6.1.1
3.30.450.30.6.1.1.1
3.30.450.30.6.1.1.1.1

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Segment boundaries for domain 1vetB00

Chopping figure for domain 1vetB00
DomainStart PDB ResidueStop PDB Residue
1vetB00 1 118

Structural Neighbourhood (7 entries)

There are 7 matching structural neighberhood comparisons for CATH ID 3.30.450.30.6.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 7 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1ifqB00 80.37 SNARE interactions in vesicular transportMus musculusVesicle-trafficking protein SEC22bGolgi membraneEndoplasmic reticulum membrane 3.30.450.50 125 9 71 2.47 3.47
3bw6A00 79.64 Vesicle fusionSNAP receptor activitySoluble fractionPalmitoyltransferase activitySynaptobrevin homolog YKT6 3.30.450.50 137 1 66 2.99 4.50
2vglS00 78.41 Huntington's diseaseEndocytosisMus musculusAP-2 complex subunit sigmaAP-2 complex subunit sigma-1 3.30.450.60 142 10 64 2.59 4.04
1stzA02 78.22 Thermotoga maritimaHeat-inducible transcription repressor hrcAHeat-inducible transcriptional repressor 3.30.450.40 149 5 67 2.84 4.19
2qybA00 77.01 Membrane protein, putativeGeobacter sulfurreducens 3.30.450.40 147 8 74 3.41 4.60
3kshA00 75.30 GAF domain-containing proteinStaphylococcus aureus subsp. aureus MRSA252Putative uncharacterized protein 3.30.450.40 152 12 67 3.15 4.65
3eeaA00 75.01 GAF domain/HD domain proteinGeobacter sulfurreducens 3.30.450.40 153 5 71 3.42 4.76
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Displaying entries 1 to 7 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1vetB00
MLRPKALTQVLSQANTGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNGNQAFNEDSLKFILMDCMEGR
VAITRVANLLLCMYAKETVGFGMLKAKAQALVQYLEEP
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1vetB00
MLRPKALTQVLSQANTGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNGNQAFNEDSLKFILMDCMEGR
VAITRVANLLLCMYAKETVGFGMLKAKAQALVQYLEEPLTQVAAS
BLAST against CATH

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Domain History Events (3)

Insertion by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Flow stage update by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Insertion by auto on 06 Mar 2006 00:07

Cut based on decision in database "DomChop" on "cathdb"