CATH Domain: 1vefA02 XML data for domain: 1vefA02

Molscript image for 1vefA02
1vefA02
PDB coordinates for domain 1vefA02

PDB 1vef, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.640 Aspartate Aminotransferase; domain 2
3.40.640.10 Type I PLP-dependent aspartate aminotransferase-like (Major domain) Gene3D
3.40.640.10.3
3.40.640.10.3.1
3.40.640.10.3.1.1
3.40.640.10.3.1.1.1
3.40.640.10.3.1.1.1.1

Segment boundaries for domain 1vefA02

Chopping figure for domain 1vefA02
DomainStart PDB ResidueStop PDB Residue
1vefA01 9 62
1vefA01 305 395
1vefA02 63 304

Structural Neighbourhood (35 entries)

There are 35 matching structural neighberhood comparisons for CATH ID 3.40.640.10.3.1.1.1.1 (SIMAX score < 5)

Displaying entries 1 to 35 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2oatA02 91.60 Ornithine--oxo-acid transaminase [EC:2.6.1.13]Arginine and proline metabolismOrnithine-oxo-acid transaminase activityVisual perceptionHomo sapiens 3.40.640.10 250 36 96 1.22 1.27
1zodA02 90.36 2,2-dialkylglycine decarboxylaseBurkholderia cepacia 3.40.640.10 264 30 91 1.45 1.59
1sffA02 90.24 Valine, leucine and isoleucine degradationPropanoate metabolismMetabolic pathwaysButanoate metabolismBeta-Alanine metabolism 3.40.640.10 260 34 93 1.41 1.51
1s0aA02 89.73 Biotin metabolismMetabolic pathwaysAdenosylmethionine-8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]Adenosylmethionine-8-amino-7-oxononanoate aminotransferaseEscherichia coli K-12 3.40.640.10 268 38 89 1.47 1.63
2gsaA02 88.69 Porphyrin and chlorophyll metabolismGlutamate-1-semialdehyde 2,1-aminomutaseGlutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]Synechococcus elongatus PCC 6301Metabolic pathways 3.40.640.10 249 34 94 2.03 2.14
1ohvA02 84.56 Sus scrofaMitochondrial matrixSuccinate-semialdehyde dehydrogenase bindingProtein homodimerization activityPyridoxal phosphate binding 3.40.640.10 295 26 78 2.00 2.53
1bs0A02 83.58 Biotin metabolismMetabolic pathways8-amino-7-oxononanoate synthase [EC:2.3.1.47]8-amino-7-oxononanoate synthase activityBiotin biosynthetic process 3.40.640.10 228 17 89 2.76 3.09
1fc4A01 82.25 Glycine, serine and threonine metabolismMetal ion bindingLigase activity2-amino-3-ketobutyrate coenzyme A ligaseGlycine C-acetyltransferase [EC:2.3.1.29] 3.40.640.10 230 16 88 2.94 3.32
1jg8A01 80.78 Thermotoga maritimaThreonine aldolase [EC:4.1.2.5]Glycine, serine and threonine metabolismMetabolic pathwaysL-allo-threonine aldolase 3.40.640.10 245 12 89 3.77 4.22
1o69A01 80.51 Campylobacter jejuniAminotransferase homolog 3.40.640.10 233 14 84 3.99 4.71
1xi9A02 80.30 Pyrococcus furiosusAminotransferase [EC:2.6.1.-]Alanine aminotransferase 3.40.640.10 242 12 87 3.46 3.95
3dr4C01 80.24 Perosamine synthetasePerosamine synthetaseCaulobacter vibrioides 3.40.640.10 236 11 83 3.43 4.11
1p3wA02 80.23 Thiamine metabolismCysteine desulfurase activitySelenocysteine lyase activityCysteine desulfuraseIron-sulfur cluster assembly 3.40.640.10 247 11 89 3.56 4.00
1lc5A02 79.89 Porphyrin and chlorophyll metabolismSalmonella enterica subsp. enterica serovar TyphimuriumThreonine-phosphate decarboxylaseThreonine-phosphate decarboxylase [EC:4.1.1.81] 3.40.640.10 225 12 87 3.59 4.10
2yrrA02 79.81 Thermus thermophilus HB8Aminotransferase, class V 3.40.640.10 241 15 87 3.74 4.29
1m32A02 79.69 2-aminoethylphosphonate--pyruvate transaminaseSalmonella enterica subsp. enterica serovar Typhimurium2-aminoethylphosphonate-pyruvate transaminase [EC:2.6.1.37]Phosphonate and phosphinate metabolismMetabolic pathways 3.40.640.10 237 14 85 3.60 4.19
1o4sA02 79.64 Tyrosine metabolismThermotoga maritimaArginine and proline metabolismAspartate aminotransferase [EC:2.6.1.1]Metabolic pathways 3.40.640.10 221 12 82 3.51 4.27
3dydA02 79.58 Tyrosine metabolismL-tyrosine:2-oxoglutarate aminotransferase activityPhenylalanine metabolismMetabolic pathwaysUbiquinone and other terpenoid-quinone biosynthesis 3.40.640.10 244 14 88 3.57 4.05
1t3iB02 79.51 Cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]Probable cysteine desulfuraseThiamine metabolismSelenoamino acid metabolismMetabolic pathways 3.40.640.10 258 13 85 3.97 4.66
1svvA01 79.12 Leishmania major strain FriedlinThreonine aldolase [EC:4.1.2.5]Glycine, serine and threonine metabolismMetabolic pathwaysPutative uncharacterized protein 3.40.640.10 242 12 87 3.61 4.12
1yizA02 78.86 Aedes aegyptiKynurenine aminotransferase 3.40.640.10 256 10 85 3.66 4.26
1fg7A01 78.82 Tyrosine metabolismHistidine metabolismMetabolic pathwaysPhenylalanine metabolismNovobiocin biosynthesis 3.40.640.10 203 12 79 3.88 4.87
2qmaA03 78.58 Diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76]Vibrio parahaemolyticusGlycine, serine and threonine metabolismDiaminobutyrate-pyruvate transaminase & L-2,4-diaminobutyrate decarboxylaseMetabolic pathways 3.40.640.10 238 10 82 3.15 3.83
2ez2A02 78.52 Citrobacter freundiiTyrosine phenol-lyase 3.40.640.10 253 13 82 3.17 3.86
1c7nA02 78.51 Treponema denticolaHemolysin 3.40.640.10 225 10 82 3.87 4.71
3b8xA01 78.38 Amino sugar and nucleotide sugar metabolismPutative pyridoxamine 5-phosphate-dependent dehydraseEscherichia coliCDP-6-deoxy-D-xylo-4-hexulose-3-dehydrase 3.40.640.10 258 12 76 3.26 4.27
1d2fA02 78.12 Nitrogen metabolismSelenoamino acid metabolismSulfur metabolismMetabolic pathwaysCysteine and methionine metabolism 3.40.640.10 243 11 90 4.14 4.55
3ftbA02 77.87 Tyrosine metabolismHistidinol-phosphate aminotransferase [EC:2.6.1.9]Histidine metabolismPhenylalanine metabolismMetabolic pathways 3.40.640.10 222 12 85 3.57 4.19
3ffhB02 77.83 Tyrosine metabolismListeria innocuaHistidinol-phosphate aminotransferase [EC:2.6.1.9]Histidine metabolismMetabolic pathways 3.40.640.10 208 14 80 3.99 4.93
3k40A02 77.80 Dopamine biosynthetic process from tyrosineDevelopmental pigmentationGrowthProtein bindingDrosophila melanogaster 3.40.640.10 267 7 79 3.37 4.22
1uu1A02 77.00 Thermotoga maritimaTyrosine metabolismHistidinol-phosphate aminotransferase [EC:2.6.1.9]Histidine metabolismMetabolic pathways 3.40.640.10 203 12 79 3.86 4.84
1mdoA01 76.35 Amino sugar and nucleotide sugar metabolismUDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferaseTwo-component systemSalmonella enterica subsp. enterica serovar TyphimuriumUDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.-] 3.40.640.10 226 13 78 3.91 4.98
2q7wA02 75.34 Tyrosine metabolismArginine and proline metabolismMetabolic pathwaysPhenylalanine metabolismCysteine and methionine metabolism 3.40.640.10 243 11 84 3.71 4.38
2hoxA02 75.01 Alliin lyase 1Allium sativum 3.40.640.10 210 9 75 3.75 4.96
1ajsB02 74.45 Tyrosine metabolismArginine and proline metabolismSus scrofaAspartate aminotransferase [EC:2.6.1.1]Aspartate aminotransferase, cytoplasmic 3.40.640.10 278 11 80 4.01 4.95
Displaying entries 1 to 35 (page 1 of 1)


Domain ATOM Sequence

>pdb|1vefA02
NPEVVEAVKRQAETLMAMPQTLPTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSG
RTMGSLSVTWEPKYREPFLPLVEPVEFIPYNDVEALKRAVDEETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALL
ILDEIQTGMGRTGKRFAFEHFGIVPDILTLAKALGGGVPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLE
RT    

Domain COMBS Sequence

>pdb|1vefA02
NPEVVEAVKRQAETLMAMPQTLPTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSG
RTMGSLSVTWEPKYREPFLPLVEPVEFIPYNDVEALKRAVDEETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALL
ILDEIQTGMGRTGKRFAFEHFGIVPDILTLAKALGGGVPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLE
RT    

Domain History Events (10)

Domain assigned by auto on 30 Aug 2007 15:46

Assigning to "3.40.640.10" based on similarity with "1wkhB02"

Flow stage update by auto on 30 Aug 2007 15:42

No in_process hits for Domain "1vefA02" ready to be processed

Update comment by auto on 30 Aug 2007 15:31

Domain "1vefA02" hits Domain "2e54A02" (49.1735537190083% over 97.9508196721311%) which is currently in process

Update comment by auto on 30 Aug 2007 10:07

Domain "1vefA02" hits Domain "1wkhB02" (100% over 100%) which is currently in process

Update comment by auto on 30 Aug 2007 06:20

Domain "1vefA02" hits Domain "1vefB02" (100% over 100%) which is currently in process

Flow stage update by auto on 30 Aug 2007 06:12

Domain "1vefA02" hits Domain "1vefB02" (100% over 100%) which is currently in process

Flow stage update by auto on 30 Aug 2007 06:12

NW result present for Domain "1vefA02"

Flow stage update by auto on 24 Aug 2007 10:06

All required files are present for Domain "1vefA02"

Flow stage update by auto on 23 Aug 2007 18:40

Beginning processing for Domain "1vefA02"

Insertion by auto on 23 Aug 2007 14:40

Final ChopClose added based on similarity with "1vefB"