CATH Domain: 1vdkB03 XML data for domain: 1vdkB03

Molscript image for 1vdkB03
1vdkB03
PDB coordinates for domain 1vdkB03

PDB 1vdk, Chain B, Domain 3

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.40 Ribonucleotide Reductase Protein R1; domain 1
1.10.40.30 Fumarase/aspartase (C-terminal domain) Gene3D
1.10.40.30.2
1.10.40.30.2.1
1.10.40.30.2.1.1
1.10.40.30.2.1.1.1
1.10.40.30.2.1.1.1.1

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Segment boundaries for domain 1vdkB03

Chopping figure for domain 1vdkB03
DomainStart PDB ResidueStop PDB Residue
1vdkB01 4 138
1vdkB02 139 404
1vdkB03 405 463

Structural Neighbourhood (9 entries)

There are 9 matching structural neighberhood comparisons for CATH ID 1.10.40.30.2.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 9 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1furA03 93.26 Citrate cycle (TCA cycle)Metabolic pathwaysFumarate hydratase class IIFumarate hydratase, class II [EC:4.2.1.2]Escherichia coli K-12 1.10.40.30 52 67 88 0.69 0.78
1jswB03 89.84 Nitrogen metabolismMetabolic pathwaysAlanine, aspartate and glutamate metabolismMembraneProtein binding 1.10.40.30 50 32 84 1.60 1.89
1j3uA03 89.19 Bacillus sp. YM55-1Aspartase 1.10.40.30 52 28 88 1.72 1.95
1q5nA03 82.63 3-carboxy-cis,cis-muconate cycloisomeraseBenzoate degradation via hydroxylation3-carboxy-cis,cis-muconate cycloisomerase [EC:5.5.1.2]Metabolic pathwaysAcinetobacter sp. ADP1 1.10.40.30 81 20 72 2.33 3.20
1c3cA03 81.81 Thermotoga maritimaAdenylosuccinate lyaseAdenylosuccinate lyase [EC:4.3.2.2]Purine metabolismAlanine, aspartate and glutamate metabolism 1.10.40.30 81 16 72 2.33 3.20
1tj7A03 81.33 Arginine and proline metabolismAlanine, aspartate and glutamate metabolismMetabolic pathwaysArgininosuccinate lyase [EC:4.3.2.1]Argininosuccinate lyase 1.10.40.30 71 16 81 2.73 3.34
1k7wA03 81.13 Argininosuccinate lyaseArgininosuccinate lyase activityAnas platyrhynchosStructural constituent of eye lens 1.10.40.30 72 16 80 2.87 3.56
1zkgA01 74.87 Thermotoga maritimaTranscriptional regulator, TetR family 1.10.10.60 46 6 74 3.62 4.85
2raeA01 72.48 Rhodococcus jostii RHA1Transcriptional regulator, AcrR family protein 1.10.10.60 43 9 67 3.10 4.57
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Displaying entries 1 to 9 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1vdkB03
NPMLATALNKAIGYDKAAEIVKKALKEKKTLKQAALELGYLTEEEFDRIVVPMRLAKPH
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1vdkB03
NPMLATALNKAIGYDKAAEIVKKALKEKKTLKQAALELGYLTEEEFDRIVVPMRLAKPHEGA
BLAST against CATH

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Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 19:04

Assigning to "1.10.40.30" based on similarity with "1vdkA03" (NWSI: 100, NWO: 100, SPS: 95.10, SPO: 96, RMSD: 0.89)

Flow stage update by auto on 28 Apr 2006 17:50

NW result present for Domain "1vdkB03"

Flow stage update by auto on 28 Apr 2006 17:45

All required files are present for Domain "1vdkB03"

Flow stage update by auto on 27 Apr 2006 17:31

Beginning processing for Domain "1vdkB03"

Insertion by auto on 09 Mar 2006 05:03

Final ChopClose added based on similarity with "1vdkA" [LEE: 0, LME: 0, MR: 0, LG: 3, SS: 96.17, SI: 100, SO: 100]