CATH Domain: 1vdkA02 XML data for domain: 1vdkA02

Molscript image for 1vdkA02
1vdkA02
PDB coordinates for domain 1vdkA02

PDB 1vdk, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.20 Up-down Bundle
1.20.200 Fumarase C; Chain A, domain 2
1.20.200.10 Fumarase/aspartase (Central domain) Gene3D
1.20.200.10.3
1.20.200.10.3.1
1.20.200.10.3.1.1
1.20.200.10.3.1.1.1
1.20.200.10.3.1.1.1.1

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Segment boundaries for domain 1vdkA02

Chopping figure for domain 1vdkA02
DomainStart PDB ResidueStop PDB Residue
1vdkA01 4 138
1vdkA02 139 404
1vdkA03 405 463

Structural Neighbourhood (5 entries)

There are 5 matching structural neighberhood comparisons for CATH ID 1.20.200.10.3.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 5 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1c3cA02 85.71 Thermotoga maritimaAdenylosuccinate lyaseAdenylosuccinate lyase [EC:4.3.2.2]Purine metabolismAlanine, aspartate and glutamate metabolism 1.20.200.10 251 18 93 2.06 2.20
1tj7A02 85.14 Arginine and proline metabolismAlanine, aspartate and glutamate metabolismMetabolic pathwaysArgininosuccinate lyase [EC:4.3.2.1]Argininosuccinate lyase 1.20.200.10 279 18 91 1.92 2.11
3c8tA02 85.08 Chelativorans sp. BNC1Fumarate lyaseBenzoate degradation via hydroxylation3-carboxy-cis,cis-muconate cycloisomerase [EC:5.5.1.2]Metabolic pathways 1.20.200.10 241 18 89 2.00 2.24
1k7wA02 83.77 Argininosuccinate lyaseArgininosuccinate lyase activityAnas platyrhynchosStructural constituent of eye lens 1.20.200.10 228 18 75 2.70 3.56
1yisA02 83.15 LocomotionPurine metabolismBody morphogenesisEmbryo development ending in birth or egg hatchingMetabolic pathways 1.20.200.10 310 15 76 1.98 2.58
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Displaying entries 1 to 5 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1vdkA02
SSNDTFPTAMYVAVALALHQRLYPAVEGLIRTFTAKAQAFDQIVKVGRTHLMDAVPITLGQEIGSWAAQLKTTLAAVKEM
EKGLYNLAIGGTAVGTGLNAHPRFGELVAKYLAEETGLPFRVAENRFAALAAHDELVNVMGAIRTLAGALMKIGNDVRWL
ASGPYAGIGEITIPANEPGSSIMPGKVNPTQVEALTMVVVRVYGNDHTVAFAGSQGNFQLNVYKPVMAYSTLESINLLAD
AVASFDAHLAQGIEPNLERIEEYLQK
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1vdkA02
SSNDTFPTAMYVAVALALHQRLYPAVEGLIRTFTAKAQAFDQIVKVGRTHLMDAVPITLGQEIGSWAAQLKTTLAAVKEM
EKGLYNLAIGGTAVGTGLNAHPRFGELVAKYLAEETGLPFRVAENRFAALAAHDELVNVMGAIRTLAGALMKIGNDVRWL
ASGPYAGIGEITIPANEPGSSIMPGKVNPTQVEALTMVVVRVYGNDHTVAFAGSQGNFQLNVYKPVMAYSTLESINLLAD
AVASFDAHLAQGIEPNLERIEEYLQK
BLAST against CATH

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Domain History Events (3)

Insertion by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Flow stage update by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Insertion by auto on 06 Mar 2006 00:06

Cut based on decision in database "DomChop" on "cathdb"