CATH Domain: 1vcnA02 XML data for domain: 1vcnA02

Molscript image for 1vcnA02
1vcnA02
PDB coordinates for domain 1vcnA02

PDB 1vcn, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.880 Gene3D
3.40.50.880.17
3.40.50.880.17.1
3.40.50.880.17.1.1
3.40.50.880.17.1.1.1
3.40.50.880.17.1.1.1.1

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Segment boundaries for domain 1vcnA02

Chopping figure for domain 1vcnA02
DomainStart PDB ResidueStop PDB Residue
1vcnA01 11 296
1vcnA02 297 547

Structural Neighbourhood (4 entries)

There are 4 matching structural neighberhood comparisons for CATH ID 3.40.50.880.17.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 4 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1qdlB00 81.22 Anthranilate synthase component II [EC:4.1.3.27]Phenylalanine, tyrosine and tryptophan biosynthesisSulfolobus solfataricusAnthranilate synthase component IIProtein binding 3.40.50.880 195 16 79 2.95 3.70
1ka9H00 78.96 Thermus thermophilus HB8Imidazole glycerol phosphate synthase subunit hisHProtein binding 3.40.50.880 195 16 78 3.52 4.49
2vdjA01 78.22 Homoserine O-succinyltransferase [EC:2.3.1.46]Sulfur metabolismCysteine and methionine metabolismBacillus cereus ATCC 10987Homoserine O-succinyltransferase 3.40.50.880 251 12 76 3.31 4.30
1l9xA00 78.16 Gamma-glutamyl hydrolaseFolate biosynthesisGamma-glutamyl hydrolase [EC:3.4.19.9]Homo sapiensGamma-glutamyl-peptidase activity 3.40.50.880 288 15 69 2.87 4.11
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Displaying entries 1 to 4 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1vcnA02
PERTVKIAIAGKPDAYLSLLEALRHAGIKNRARVEVKWVDAAADLDEAFRDVSGILVPGGVRGIEGKVRAAQYARERKIP
YLGICLGLQIAVIEFARNVAGLKGANSTEFDPHTPHPVIDLMTMRLGDWPMRIKPGTLLHRLYGKEEVLERHRHRYEVNP
LYVDGLERAGLVVSATTPGMGAGLVEAIELKDHPFFLGLQSHPEFKSRPMRPSPPFVGFVEAALAYQ
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1vcnA02
PERTVKIAIAGKYVKMPDAYLSLLEALRHAGIKNRARVEVKWVDAESLEAADLDEAFRDVSGILVPGGFGVRGIEGKVRA
AQYARERKIPYLGICLGLQIAVIEFARNVAGLKGANSTEFDPHTPHPVIDLMPEQLEVEGLGGTMRLGDWPMRIKPGTLL
HRLYGKEEVLERHRHRYEVNPLYVDGLERAGLVVSATTPGMRGRGAGLVEAIELKDHPFFLGLQSHPEFKSRPMRPSPPF
VGFVEAALAYQERA
BLAST against CATH

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Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 19:01

Assigning to "3.40.50.880" based on similarity with "1vcmA02" (NWSI: 100, NWO: 100, SPS: 95.08, SPO: 92, RMSD: 1.16)

Flow stage update by auto on 28 Apr 2006 17:50

NW result present for Domain "1vcnA02"

Flow stage update by auto on 28 Apr 2006 17:45

All required files are present for Domain "1vcnA02"

Flow stage update by auto on 27 Apr 2006 17:31

Beginning processing for Domain "1vcnA02"

Insertion by auto on 09 Mar 2006 04:38

Final ChopClose added based on similarity with "1vcmA" [LEE: 0, LME: 0, MR: 1, LG: 11, SS: 94.53, SI: 100, SO: 100]