CATH Domain: 1vclA02 XML data for domain: 1vclA02

Molscript image for 1vclA02
1vclA02
PDB coordinates for domain 1vclA02

PDB 1vcl, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.80 Trefoil
2.80.10 Trefoil (Acidic Fibroblast Growth Factor, subunit A)
2.80.10.50 Gene3D
2.80.10.50.15
2.80.10.50.15.1
2.80.10.50.15.1.1
2.80.10.50.15.1.1.1
2.80.10.50.15.1.1.1.1

[top]
Segment boundaries for domain 1vclA02

Chopping figure for domain 1vclA02
DomainStart PDB ResidueStop PDB Residue
1vclA01 2 150
1vclA02 151 284
1vclA03 285 432

Structural Neighbourhood (17 entries)

There are 17 matching structural neighberhood comparisons for CATH ID 2.80.10.50.15.1.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 17 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1m2tB02 87.53 Beta-galactoside-specific lectin 1Viscum album 2.80.10.50 124 20 89 2.18 2.43
1upsA02 85.35 Clostridium perfringensGlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosidase 2.80.10.50 133 12 92 2.43 2.63
1n4kA01 83.90 MicrosomeVoluntary musculoskeletal movementNucleolusPhosphoinositide bindingSarcoplasmic reticulum 2.80.10.50 141 10 87 3.60 4.09
1jlxA02 83.85 Amaranthus caudatusAgglutinin 2.80.10.50 140 5 91 3.80 4.16
1w3fA01 83.78 Laetiporus sulphureusHemolytic lectin LSLa 2.80.10.50 147 17 89 3.31 3.71
1dfcA03 83.60 FascinActin cytoskeletonActin filament bundle assemblyHomo sapiensCell proliferation 2.80.10.50 123 12 90 2.55 2.82
2fdbN00 82.41 Type 2 fibroblast growth factor receptor bindingMesonephros developmentPositive regulation of cell proliferationType 1 fibroblast growth factor receptor bindingExtracellular space 2.80.10.50 148 7 83 2.30 2.75
1dfcA01 82.40 FascinActin cytoskeletonActin filament bundle assemblyHomo sapiensCell proliferation 2.80.10.50 122 7 83 1.94 2.32
1sr4A00 81.68 Haemophilus ducreyiCytolethal distending toxin subunit ACytolethal distending toxin subunit A 2.80.10.50 167 13 76 3.46 4.55
1dfcA04 81.63 FascinActin cytoskeletonActin filament bundle assemblyHomo sapiensCell proliferation 2.80.10.50 107 12 77 2.16 2.78
1wd3A02 81.51 Alpha-L-arabinofuranosidase BAspergillus awamori 2.80.10.50 162 7 74 2.32 3.11
1jlxA01 81.51 Amaranthus caudatusAgglutinin 2.80.10.50 159 7 83 3.58 4.31
1dfcA02 81.39 FascinActin cytoskeletonActin filament bundle assemblyHomo sapiensCell proliferation 2.80.10.50 123 8 86 2.81 3.25
1ihkA00 80.31 Pathways in cancerMelanomaMAPK signaling pathwayRegulation of actin cytoskeletonGlia-activating factor 2.80.10.50 157 8 77 2.50 3.24
1sr4C00 78.96 Cytolethal distending toxin protein CCytolethal distending toxin subunit CHaemophilus ducreyi 2.80.10.50 154 8 74 3.12 4.21
1hcdA00 78.72 Membrane fractionPlasma membraneActin filament bindingHisactophilin-1Cytosol 2.80.10.50 118 12 85 3.11 3.62
3iagC02 76.58 Transcription factor bindingHeart developmentRegulation of timing of cell differentiationDefense response to bacteriumNotch signaling pathway 2.80.10.50 155 14 65 3.12 4.79
[1]
Displaying entries 1 to 17 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|1vclA02
PELFYGRLRNEKSDLCLDVEGSDGKGNVLMYSCEDNLDQWFRYYENGEIVNAKSGMCLDVEGSDGSGNVGIYRCDDLRDQ
MWSRPNAYCNGDYCSFLNKESNKCLDVSGDQGTGDVGTWQCDGLPDQRFKWVFD
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|1vclA02
PELFYGRLRNEKSDLCLDVEGSDGKGNVLMYSCEDNLDQWFRYYENGEIVNAKSGMCLDVEGSDGSGNVGIYRCDDLRDQ
MWSRPNAYCNGDYCSFLNKESNKCLDVSGDQGTGDVGTWQCDGLPDQRFKWVFD
BLAST against CATH

[top]
Domain History Events (3)

Insertion by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Flow stage update by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Insertion by auto on 06 Mar 2006 00:06

Cut based on decision in database "DomChop" on "cathdb"