CATH Domain: 1vclA01 XML data for domain: 1vclA01

Molscript image for 1vclA01
1vclA01
PDB coordinates for domain 1vclA01

PDB 1vcl, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.80 Trefoil
2.80.10 Trefoil (Acidic Fibroblast Growth Factor, subunit A)
2.80.10.50 Gene3D
2.80.10.50.12
2.80.10.50.12.1
2.80.10.50.12.1.1
2.80.10.50.12.1.1.1
2.80.10.50.12.1.1.1.1

Segment boundaries for domain 1vclA01

Chopping figure for domain 1vclA01
DomainStart PDB ResidueStop PDB Residue
1vclA01 2 150
1vclA02 151 284
1vclA03 285 432

Structural Neighbourhood (14 entries)

There are 14 matching structural neighberhood comparisons for CATH ID 2.80.10.50.12.1.1.1.1 (SIMAX score < 5)

Displaying entries 1 to 14 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1vclA02 91.27 Cucumaria echinataHemolytic lectin CEL-III 2.80.10.50 134 32 87 1.25 1.42
1m2tB02 86.16 Beta-galactoside-specific lectin 1Viscum album 2.80.10.50 124 20 80 1.89 2.35
1dqgA00 82.89 Mus musculusMacrophage mannose receptor 1Mannose bindingCell surfaceTransmembrane receptor activity 2.80.10.50 134 14 82 2.81 3.40
1upsA02 82.65 Clostridium perfringensGlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosidase 2.80.10.50 133 9 84 2.56 3.03
1n4kA01 81.34 MicrosomeVoluntary musculoskeletal movementNucleolusPhosphoinositide bindingSarcoplasmic reticulum 2.80.10.50 141 7 82 3.54 4.29
1jlxA02 81.24 Amaranthus caudatusAgglutinin 2.80.10.50 140 4 88 3.96 4.47
2fdbN00 81.13 Type 2 fibroblast growth factor receptor bindingMesonephros developmentPositive regulation of cell proliferationType 1 fibroblast growth factor receptor bindingExtracellular space 2.80.10.50 148 10 84 3.13 3.70
1dfcA03 80.16 FascinActin cytoskeletonActin filament bundle assemblyHomo sapiensCell proliferation 2.80.10.50 123 6 82 2.80 3.39
1dfcA01 79.96 FascinActin cytoskeletonActin filament bundle assemblyHomo sapiensCell proliferation 2.80.10.50 122 11 75 2.30 3.03
1md6A00 79.73 Mus musculusInterleukin-1 family member 5Interleukin 1 family, member 5 (delta) 2.80.10.50 154 6 85 3.61 4.24
1ihkA00 79.44 Pathways in cancerMelanomaMAPK signaling pathwayRegulation of actin cytoskeletonGlia-activating factor 2.80.10.50 157 8 80 3.17 3.95
1dfcA02 79.41 FascinActin cytoskeletonActin filament bundle assemblyHomo sapiensCell proliferation 2.80.10.50 123 13 78 2.91 3.71
1dfcA04 78.64 FascinActin cytoskeletonActin filament bundle assemblyHomo sapiensCell proliferation 2.80.10.50 107 11 69 2.30 3.33
1hcdA00 75.08 Membrane fractionPlasma membraneActin filament bindingHisactophilin-1Cytosol 2.80.10.50 118 8 77 3.14 4.07
Displaying entries 1 to 14 (page 1 of 1)


Domain ATOM Sequence

>pdb|1vclA01
VLCTNPLDIGELRSFKSKQCVDIVGNQGSGNIATYDCDGLSDQQIIICGDGTIRNEARNYCFTPDGSGNANVMSSPCTLY
PEIPSSQRWRQGRRKTFTDNGGIEQVATEIINLASGKCLDIEGSDGTGDIGVYDCQNLDDQYFYVRSRG    

Domain COMBS Sequence

>pdb|1vclA01
XVLCTNPLDIGELRSFKSKQCVDIVGNQGSGNIATYDCDGLSDQQIIICGDGTIRNEARNYCFTPDGSGNANVMSSPCTL
YPEIPSSQRWRQGRRKTFTDNGGIEQVATEIINLASGKCLDIEGSDGTGDIGVYDCQNLDDQYFYVRSRG    

Domain History Events (3)

Insertion by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Flow stage update by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Insertion by auto on 06 Mar 2006 00:06

Cut based on decision in database "DomChop" on "cathdb"