CATH Domain: 1vc3B00 XML data for domain: 1vc3B00

Molscript image for 1vc3B00
1vc3B00
PDB coordinates for domain 1vc3B00

PDB 1vc3, Chain B, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.40 Barwin-like endoglucanases
2.40.40.20 Gene3D
2.40.40.20.5
2.40.40.20.5.1
2.40.40.20.5.1.1
2.40.40.20.5.1.1.1
2.40.40.20.5.1.1.1.1

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Segment boundaries for domain 1vc3B00

Chopping figure for domain 1vc3B00
DomainStart PDB ResidueStop PDB Residue
1vc3B00 26 120

Structural Neighbourhood (7 entries)

There are 7 matching structural neighberhood comparisons for CATH ID 2.40.40.20.5.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 7 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2c45A00 89.53 Beta-Alanine metabolismPantothenate and CoA biosynthesisMetabolic pathwaysAspartate 1-decarboxylase [EC:4.1.1.11]Aspartate 1-decarboxylase 2.40.40.20 113 61 77 0.62 0.80
1e32A01 80.55 Mus musculusPolyubiquitin bindingProtein complexAggresome assemblyTransitional endoplasmic reticulum ATPase 2.40.40.20 87 11 69 2.14 3.08
2iv2X04 79.36 Methane metabolismMetabolic pathwaysGlyoxylate and dicarboxylate metabolismFormate dehydrogenase HFormate dehydrogenase, alpha subunit [EC:1.2.1.2] 2.40.40.20 99 8 62 3.12 4.98
1cz4A01 79.11 VCP-like ATPaseTransitional endoplasmic reticulum ATPaseThermoplasma acidophilum 2.40.40.20 92 8 66 2.12 3.20
1wlfA01 78.14 Mus musculusPeroxisome biogenesis factor 1 2.40.40.20 84 11 68 2.40 3.51
1qcsA01 77.65 Vesicle-fusing ATPaseCricetulus griseusProtein binding 2.40.40.20 81 6 62 2.62 4.22
1cr5A01 76.89 Mating projection tipVesicular-fusion protein SEC18Vacuole fusion, non-autophagicATPase activityER to Golgi vesicle-mediated transport 2.40.40.20 77 11 57 2.46 4.25
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Displaying entries 1 to 7 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1vc3B00
VTVDQDLLDAAGILPFEQVDIYDITNGARLTTYALPGERGSGVIGINGAAAHLVKPGDLVILVAYGVFDEEEARNLKPTV
VLVDERNRILEVRKG
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1vc3B00
XVTVDQDLLDAAGILPFEQVDIYDITNGARLTTYALPGERGSGVIGINGAAAHLVKPGDLVILVAYGVFDEEEARNLKPT
VVLVDERNRILEVRKG
BLAST against CATH

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Domain History Events (6)

Domain assigned by auto on 01 Nov 2006 14:39

Assigning to "2.40.40.20" based on similarity with "1aw8B00"

Flow stage update by auto on 31 Oct 2006 01:52

No in_process hits for Domain "1vc3B00" ready to be processed

Flow stage update by auto on 31 Oct 2006 01:52

NW result present for Domain "1vc3B00"

Flow stage update by auto on 28 Oct 2006 01:49

All required files are present for Domain "1vc3B00"

Flow stage update by auto on 27 Oct 2006 14:02

Beginning processing for Domain "1vc3B00"

Insertion by cuff on 27 Oct 2006 10:50

another nice batch of choppings