CATH Domain: 1vb3A03 XML data for domain: 1vb3A03

Molscript image for 1vb3A03
1vb3A03
PDB coordinates for domain 1vb3A03

PDB 1vb3, Chain A, Domain 3

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.1100 Gene3D
3.40.50.1100.5
3.40.50.1100.5.1
3.40.50.1100.5.1.1
3.40.50.1100.5.1.1.1
3.40.50.1100.5.1.1.1.1

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Segment boundaries for domain 1vb3A03

Chopping figure for domain 1vb3A03
DomainStart PDB ResidueStop PDB Residue
1vb3A01 1 81
1vb3A02 82 102
1vb3A02 215 394
1vb3A03 103 214
1vb3A03 395 428

Structural Neighbourhood (5 entries)

There are 5 matching structural neighberhood comparisons for CATH ID 3.40.50.1100.5.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 5 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1v7cA02 83.58 Threonine synthase [EC:4.2.3.1]Vitamin B6 metabolismGlycine, serine and threonine metabolismThreonine synthaseMetabolic pathways 3.40.50.1100 97 18 66 1.81 2.72
1ve1A02 81.45 Thermus thermophilus HB8Cysteine synthase A [EC:2.5.1.47]Selenoamino acid metabolismCysteine synthaseSulfur metabolism 3.40.50.1100 108 16 69 2.53 3.66
1p5jA02 79.79 Protein homodimerization activityL-serine ammonia-lyase activityGlycine, serine and threonine metabolismPyruvate biosynthetic processMetabolic pathways 3.40.50.1100 96 16 65 2.43 3.70
1v71A02 77.78 Serine racemaseSchizosaccharomyces pombe 3.40.50.1100 97 18 66 2.93 4.41
1j0aA02 77.34 1-aminocyclopropane-1-carboxylate deaminase [EC:3.5.99.7]Pyrococcus horikoshiiPropanoate metabolismPutative 1-aminocyclopropane-1-carboxylate deaminase 3.40.50.1100 104 9 69 3.09 4.47
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Displaying entries 1 to 5 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1vb3A03
TLAFKDFGGRFMAQMLTHIAGDKPVTILTATSGDTGAAVAHAFYGLPNVKVVILYPRGKISPLQEKLFCTLGGNIETVAI
DGDFDACQALVKQAFDDEELKVALGLNSANSIDLPKELAERADLPLLSHNLPADFAALRKLMMNHQ
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1vb3A03
TLAFKDFGGRFMAQMLTHIAGDKPVTILTATSGDTGAAVAHAFYGLPNVKVVILYPRGKISPLQEKLFCTLGGNIETVAI
DGDFDACQALVKQAFDDEELKVALGLNSANSIDLPKELAERADLPLLSHNLPADFAALRKLMMNHQ
BLAST against CATH

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Domain History Events (6)

Domain assigned by auto on 23 Nov 2007 14:24

Assigning to "3.40.50.1100" based on similarity with "1kl7A03"

Flow stage update by auto on 23 Nov 2007 14:04

No in_process hits for Domain "1vb3A03" ready to be processed

Flow stage update by auto on 23 Nov 2007 14:02

NW result present for Domain "1vb3A03"

Flow stage update by auto on 23 Nov 2007 14:01

All required files are present for Domain "1vb3A03"

Flow stage update by auto on 13 Nov 2007 00:11

Beginning processing for Domain "1vb3A03"

Insertion by cuff on 25 Sep 2007 16:32

nice chopping