CATH Domain: 1v8cA01 XML data for domain: 1v8cA01

Molscript image for 1v8cA01
1v8cA01
PDB coordinates for domain 1v8cA01

PDB 1v8c, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.10 Roll
3.10.20 Ubiquitin-like (UB roll)
3.10.20.30 Gene3D
3.10.20.30.8
3.10.20.30.8.1
3.10.20.30.8.1.1
3.10.20.30.8.1.1.1
3.10.20.30.8.1.1.1.1

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Segment boundaries for domain 1v8cA01

Chopping figure for domain 1v8cA01
DomainStart PDB ResidueStop PDB Residue
1v8cA01 1 85
1v8cA02 86 165

Structural Neighbourhood (37 entries)

There are 37 matching structural neighberhood comparisons for CATH ID 3.10.20.30.8.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 37 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2k9xA00 83.04 Ubiquitin related modifier 1Trypanosoma bruceiPutative uncharacterized protein 3.10.20.30 102 17 83 2.43 2.92
1p1aA00 81.36 Nucleotide excision repairUV excision repair protein RAD23 homolog BSingle-stranded DNA bindingHomo sapiensUV excision repair protein RAD23 3.10.20.90 85 4 83 3.96 4.74
1wm3A00 81.28 Small ubiquitin-related modifierHomo sapiensSmall ubiquitin-related modifier 2Protein sumoylationProtein binding 3.10.20.90 72 9 71 2.50 3.48
3a4rA00 81.15 Mus musculusNFATC2-interacting proteinRegulation of transcription, DNA-dependentCytokine production 3.10.20.90 79 12 72 2.73 3.74
1wh3A01 80.92 CytoplasmDNA binding59 kDa 2'-5'-oligoadenylate synthase-like proteinThyroid hormone receptor bindingNucleolus 3.10.20.90 71 8 71 2.58 3.60
1ryjA00 80.89 Methanothermobacter thermautotrophicus str. Delta HPutative uncharacterized protein 3.10.20.30 70 15 69 2.51 3.62
1wywB00 80.78 Nuclear poreNegative regulation of transcriptionSmall ubiquitin-related modifier 1Protein bindingProtein sumoylation 3.10.20.90 79 7 80 3.95 4.94
1y8rC00 80.51 Nuclear poreNegative regulation of transcriptionSmall ubiquitin-related modifier 1Protein sumoylationProtein binding 3.10.20.90 84 7 80 3.99 4.99
1zud400 80.43 Sulfur carrier protein ThiSThiamine biosynthesis ThiSEscherichia coli K-12 3.10.20.30 66 19 69 2.44 3.52
2zeqA00 80.27 Synaptic transmission, glutamatergicLearningAdult locomotory behaviorParkinson's diseaseDopamine metabolic process 3.10.20.90 78 6 80 3.76 4.70
2bwfA00 80.20 Ubiquitin domain-containing protein DSK2Protein binding, bridgingSpindle pole body duplication in nuclear envelopeSaccharomyces cerevisiaeER-associated protein catabolic process 3.10.20.90 77 11 74 2.77 3.74
1t0yA00 80.09 Caenorhabditis elegansTubulin-specific chaperone B 3.10.20.90 90 7 73 3.07 4.19
1h4rA01 79.92 Negative regulation of cell-cell adhesionSchwann cell proliferationCytoskeletonNucleolusEarly endosome 3.10.20.90 78 7 76 3.47 4.54
1z2mA02 79.91 RIG-I-like receptor signaling pathwayInterferon-induced 17 kDa proteinISG15-protein conjugationHomo sapiensUbiquitin cross-reactive protein 3.10.20.90 77 11 78 3.62 4.59
1tygB00 79.82 Sulfur carrier protein ThiSThiamine biosynthesis ThiSBacillus subtilis 3.10.20.30 65 12 69 2.79 4.02
2fazA00 79.75 E3 ubiquitin-protein ligase UHRF1RNA polymerase II transcription factor activityProtein bindingCell proliferationSequence-specific DNA binding transcription factor activity 3.10.20.90 77 10 81 3.78 4.66
1yqbA01 79.65 Ubiquilin-3Homo sapiensUbiquilin 3.10.20.90 71 12 75 3.57 4.74
3cwiA00 79.54 Thiamine biosynthesis ThiSGeobacter metallireducens GS-15ThiS, thiamine-biosynthesis 3.10.20.30 67 17 72 3.25 4.46
1z2mA01 79.46 RIG-I-like receptor signaling pathwayInterferon-induced 17 kDa proteinISG15-protein conjugationHomo sapiensUbiquitin cross-reactive protein 3.10.20.90 75 13 78 3.79 4.81
1wgdA00 79.43 Endoplasmic reticulum membraneHomo sapiensHomocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 proteinProtein binding 3.10.20.90 93 20 73 3.58 4.90
2he7A01 79.40 Tight junctionErythrocyte membrane protein band 4.1Homo sapiensBand 4.1-like protein 3Cell-cell junction 3.10.20.90 80 6 74 2.81 3.79
1m94A00 79.26 Ubiquitin-like protein 5Protein modification processProtein bindingNuclear mRNA splicing, via spliceosomeMating projection 3.10.20.90 73 12 72 2.92 4.00
1wmhB00 78.71 Partitioning defective 6 homolog alphaTranscription factor bindingViral reproductionHomo sapiens 3.10.20.240 82 9 76 3.28 4.29
1lfdA00 78.49 Rattus norvegicusRal guanine nucleotide dissociation stimulatorSmall GTPase mediated signal transduction 3.10.20.90 87 5 78 3.64 4.66
1h8cA00 78.42 Cytoplasmic sequestering of NF-kappaBHeat shock protein bindingFAS-associated factor 1CytosolPositive regulation of protein complex assembly 3.10.20.90 82 13 76 2.89 3.78
1wxmA01 78.40 Bladder cancerPathways in cancerNon-small cell lung cancerAcute myeloid leukemiaProtein binding 3.10.20.90 71 14 77 3.52 4.53
1wx9A00 78.26 Large proline-rich protein BAT3Homo sapiensProtein binding 3.10.20.90 86 11 79 3.72 4.70
1c1yB00 78.16 RAF proto-oncogene serine/threonine-protein kinaseNeurotrophin signaling pathwayNon-small cell lung cancerT cell receptor signaling pathwayProtein binding 3.10.20.90 77 11 78 3.48 4.41
1tkeA01 77.63 Aminoacyl-tRNA biosynthesisThreonyl-tRNA synthetaseZinc ion bindingThreonyl-tRNA synthetase [EC:6.1.1.3]RNA binding 3.10.20.30 64 14 70 3.13 4.43
1wmhA00 77.55 Tight junctionInsulin signaling pathwayEndocytosisVesicle-mediated transportProtein binding 3.10.20.240 83 7 76 3.42 4.47
1oqyA01 77.35 Nucleotide excision repairNucleotide-excision repairUV excision repair protein RAD23 homolog ASingle-stranded DNA bindingHomo sapiens 3.10.20.90 79 3 83 3.92 4.69
2nptB01 76.86 Mitogen-activated protein kinase kinase kinase 2Gap junctionMitogen-activated protein kinase kinase kinase 2 [EC:2.7.11.25]GnRH signaling pathwayMAPK signaling pathway 3.10.20.240 81 6 74 3.67 4.95
2nptC01 76.44 Homo sapiensProtein bindingDual specificity mitogen-activated protein kinase kinase 5 3.10.20.240 88 8 72 3.53 4.85
1uh6A00 76.36 Mus musculusUbiquitin-like protein 5Ubiquitin-like protein 5 3.10.20.90 100 8 61 2.66 4.36
2kfjA00 76.34 Cell division control protein 24MAPK signaling pathway - yeastMating projection tipInvasive growth in response to glucose limitationCell division control protein 24 3.10.20.240 86 2 70 3.42 4.82
1v2yA00 76.20 U11/U12 small nuclear ribonucleoprotein 25 kDa proteinMus musculus 3.10.20.90 105 8 65 2.61 3.97
1s3sH00 75.01 Rattus norvegicusGolgi organizationCellular membrane fusionNSFL1 cofactor p47Protein binding 3.10.20.90 107 8 59 2.25 3.76
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Displaying entries 1 to 37 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1v8cA01
PKVNLYATFRDLTGKSQLELPGATVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVRYLQGLSTPLSPGATLDL
FPPVA
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1v8cA01
PKVNLYATFRDLTGKSQLELPGATVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVRYLQGLSTPLSPGATLDL
FPPVA
BLAST against CATH

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Domain History Events (3)

Insertion by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Flow stage update by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Insertion by auto on 06 Mar 2006 00:05

Cut based on decision in database "DomChop" on "cathdb"