CATH Domain: 1v3yA00 XML data for domain: 1v3yA00

Molscript image for 1v3yA00
1v3yA00
PDB coordinates for domain 1v3yA00

PDB 1v3y, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.90 Alpha-Beta Complex
3.90.45 Peptide Deformylase
3.90.45.10 Peptide Deformylase Gene3D
3.90.45.10.3
3.90.45.10.3.1
3.90.45.10.3.1.1
3.90.45.10.3.1.1.1
3.90.45.10.3.1.1.1.1

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Segment boundaries for domain 1v3yA00

Chopping figure for domain 1v3yA00
DomainStart PDB ResidueStop PDB Residue
1v3yA00 1 182

Structural Neighbourhood (2 entries)

There are 2 matching structural neighberhood comparisons for CATH ID 3.90.45.10.3.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 2 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1lmeA00 91.19 Thermotoga maritimaPeptide deformylase[EC:3.5.1.88] 3.90.45.10 153 44 84 1.10 1.30
1rl4B00 90.16 Plasmodium falciparum 3D7Formylmethionine deformylase, putativeFormylmethionine deformylase [EC:3.5.1.31]Cysteine and methionine metabolismGlyoxylate and dicarboxylate metabolism 3.90.45.10 156 32 90 1.41 1.56
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Displaying entries 1 to 2 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1v3yA00
MVYPIRLYGDPVLRRKARPVEDFSGIKRLAEDMLETMFEAKGVGLAAPQIGLSQRLFVAVELRELVRRVYVVANPVITYR
EGLVEGTEGLSLPGLYSEEVPRAERIRVEYQDEEGRGRVLELEGYMARVFQHEIDHLDGILFFERLPKPKREAFLEANRA
ELVRFQKEA
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1v3yA00
MVYPIRLYGDPVLRRKARPVEDFSGIKRLAEDMLETMFEAKGVGLAAPQIGLSQRLFVAVEYADEPEGEEERPLRELVRR
VYVVANPVITYREGLVEGTEGXLSLPGLYSEEVPRAERIRVEYQDEEGRGRVLELEGYMARVFQHEIDHLDGILFFERLP
KPKREAFLEANRAELVRFQKEARALLKELSQG
BLAST against CATH

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Domain History Events (8)

Domain assigned by auto on 15 Dec 2006 15:40

Assigning to "3.90.45.10" based on similarity with "1v3yB00"

Flow stage update by auto on 15 Dec 2006 15:38

No in_process hits for Domain "1v3yA00" ready to be processed

Update comment by auto on 15 Dec 2006 11:35

Domain "1v3yA00" hits Domain "1v3yB00" (99.4791666666667% over 100%) which is currently in process

Flow stage update by auto on 15 Dec 2006 11:34

Domain "1v3yA00" hits Domain "1v3yB00" (99.4791666666667% over 100%) which is currently in process

Flow stage update by auto on 15 Dec 2006 11:34

NW result present for Domain "1v3yA00"

Flow stage update by auto on 14 Dec 2006 15:49

All required files are present for Domain "1v3yA00"

Flow stage update by auto on 13 Dec 2006 15:37

Beginning processing for Domain "1v3yA00"

Insertion by auto on 13 Dec 2006 15:26

Final ChopClose added based on similarity with "1v3yB"