CATH Domain: 1v1qA00 XML data for domain: 1v1qA00

Molscript image for 1v1qA00
1v1qA00
PDB coordinates for domain 1v1qA00

PDB 1v1q, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.50 OB fold (Dihydrolipoamide Acetyltransferase, E2P)
2.40.50.140 Nucleic acid-binding proteins Gene3D
2.40.50.140.16
2.40.50.140.16.1
2.40.50.140.16.1.1
2.40.50.140.16.1.1.1
2.40.50.140.16.1.1.1.1

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Segment boundaries for domain 1v1qA00

Chopping figure for domain 1v1qA00
DomainStart PDB ResidueStop PDB Residue
1v1qA00 -4 107

Structural Neighbourhood (12 entries)

There are 12 matching structural neighberhood comparisons for CATH ID 2.40.50.140.16.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 12 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1x3eA00 86.53 Homologous recombinationDNA replicationMycobacterium smegmatis str. MC2 155Single-strand DNA-binding proteinSingle-stranded DNA-binding protein 2.40.50.140 110 13 93 3.53 3.77
3ullA00 85.47 DNA replicationPositive regulation of helicase activityMitochondrial nucleoidSingle-stranded DNA-binding protein, mitochondrialHomologous recombination 2.40.50.140 106 16 92 3.75 4.04
3lgjB00 85.46 DNA replicationHomologous recombinationBartonella henselaeSingle-strand DNA-binding proteinSingle-stranded DNA-binding protein 2.40.50.140 96 18 83 2.41 2.88
2vw9B00 85.09 Homologous recombinationDNA replicationHelicobacter pyloriSingle-strand DNA-binding proteinSingle-stranded DNA-binding protein 2.40.50.140 105 15 90 4.30 4.73
2hqlA01 82.07 Uncharacterized protein MG376 homologMycoplasma pneumoniae 2.40.50.140 91 14 81 3.39 4.14
1nnxA00 80.36 Escherichia coli O157:H7Protein ygiW 2.40.50.200 93 9 66 2.31 3.48
1y14D02 76.19 Pyrimidine metabolismNuclear-transcribed mRNA catabolic process, exonucleolyticCytoplasmic mRNA processing bodyPurine metabolismPositive regulation of nuclear-transcribed mRNA poly(A) tail shortening 2.40.50.140 87 14 64 3.21 4.97
1cukA01 76.17 Homologous recombinationHolliday junction ATP-dependent DNA helicase ruvAHolliday junction DNA helicase RuvAEscherichia coli K-12 2.40.50.140 66 10 59 2.68 4.54
2zteA01 75.92 Homologous recombinationHolliday junction ATP-dependent DNA helicase ruvAHolliday junction DNA helicase RuvAMycobacterium tuberculosis 2.40.50.140 65 13 58 2.25 3.87
2ztdA01 75.24 Homologous recombinationHolliday junction ATP-dependent DNA helicase ruvAHolliday junction DNA helicase RuvAMycobacterium tuberculosis 2.40.50.140 71 14 62 2.98 4.75
1g29102 71.86 Maltose transport protein MalKThermococcus litoralis 2.40.50.140 45 8 40 1.60 3.91
1bkbA02 71.34 Pyrobaculum aerophilumTranslation initiation factor 5A 2.40.50.140 62 8 56 2.76 4.90
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Displaying entries 1 to 12 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1v1qA00
PNSLMTNRLVLSGTVCRAPLRKVSPSGIPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQAITHSITVGSRITVQG
FISCHKAKNGLSKMVLHAEQIELIDSVDKLA
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1v1qA00
MASMTGGQQMGRDPNSLMTNRLVLSGTVCRAPLRKVSPSGIPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQAIT
HSITVGSRITVQGFISCHKAKNGLSKMVLHAEQIELIDSVDKLAAALEHHHHHH
BLAST against CATH

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Domain History Events (3)

Insertion by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Flow stage update by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Insertion by auto on 06 Mar 2006 00:04

Cut based on decision in database "DomChop" on "cathdb"