CATH Domain: 1v1aA00 XML data for domain: 1v1aA00

Molscript image for 1v1aA00
1v1aA00
PDB coordinates for domain 1v1aA00

PDB 1v1a, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.1190 UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase
3.40.1190.20 Gene3D
3.40.1190.20.14
3.40.1190.20.14.1
3.40.1190.20.14.1.1
3.40.1190.20.14.1.1.1
3.40.1190.20.14.1.1.1.1

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Segment boundaries for domain 1v1aA00

Chopping figure for domain 1v1aA00
DomainStart PDB ResidueStop PDB Residue
1v1aA00 1 302

Structural Neighbourhood (9 entries)

There are 9 matching structural neighberhood comparisons for CATH ID 3.40.1190.20.14.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 9 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1tyyB00 87.14 Amino sugar and nucleotide sugar metabolismStarch and sucrose metabolismFructose and mannose metabolismMetabolic pathwaysFructokinase [EC:2.7.1.4] 3.40.1190.20 292 25 92 2.19 2.37
2afbB00 86.65 Thermotoga maritima2-dehydro-3-deoxygluconokinase [EC:2.7.1.45]Pentose phosphate pathwayPentose and glucuronate interconversions2-keto-3-deoxygluconate kinase 3.40.1190.20 319 30 92 2.29 2.48
2fv7A00 85.71 Pentose phosphate pathwayRibokinaseRibokinase [EC:2.7.1.15]Homo sapiens 3.40.1190.20 308 22 92 2.54 2.74
2abqA00 82.83 Fructose 1-phosphate kinase1-phosphofructokinase [EC:2.7.1.56]Fructose and mannose metabolismBacillus halodurans 3.40.1190.20 302 20 90 3.06 3.37
2ajrA01 78.38 Thermotoga maritima1-phosphofructokinase [EC:2.7.1.56]Fructose and mannose metabolismSugar kinase, pfkB family 3.40.1190.20 259 15 78 3.22 4.12
3bf5A01 76.84 Pentose phosphate pathwayRibokinase [EC:2.7.1.15]Thermoplasma acidophilumRibokinase related protein 3.40.1190.20 221 17 71 3.41 4.80
1ub0A00 76.56 TransferaseThiamine metabolismHydroxymethylpyrimidine kinase [EC:2.7.1.49]Phosphomethylpyrimidine kinase [EC:2.7.4.7]Metabolic pathways 3.40.1190.20 246 19 74 3.25 4.39
2i5bA00 75.99 Thiamine metabolismBacillus subtilisPyridoxine kinasePhosphomethylpyrimidine kinase [EC:2.7.4.7]Metabolic pathways 3.40.1190.20 269 13 78 3.57 4.55
3drwB01 75.11 Pyrococcus horikoshiiADP-specific phosphofructokinaseADP-specific phosphofructokinase [EC:2.7.1.146] 3.40.1190.20 330 12 63 3.16 4.94
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Displaying entries 1 to 9 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1v1aA00
MLEVVTAGEPLVALVPQEPGHLRGKRLLEVYVGGAEVNVAVALARLGVKVGFVGRVGEDELGAMVEERLRAEGVDLTHFR
RAPGFTGLYLREYLPLGQGRVFYYRKGSAGSALAPGAFDPDYLEGVRFLHLSGITPALSPEARAFSLWAMEEAKRRGVRV
SLDVNYRQTLWSPEEARGFLERALPGVDLLFLSEEEAELLFGRVEEALRALSAPEVVLKRGAKGAWAFVDGRRVEGSAFA
VEAVDPVGAGDAFAAGYLAGAVWGLPVEERLRLANLLGASVAASRGDHEGAPYREDLEVLLK
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1v1aA00
MLEVVTAGEPLVALVPQEPGHLRGKRLLEVYVGGAEVNVAVALARLGVKVGFVGRVGEDELGAMVEERLRAEGVDLTHFR
RAPGFTGLYLREYLPLGQGRVFYYRKGSAGSALAPGAFDPDYLEGVRFLHLSGITPALSPEARAFSLWAMEEAKRRGVRV
SLDVNYRQTLWSPEEARGFLERALPGVDLLFLSEEEAELLFGRVEEALRALSAPEVVLKRGAKGAWAFVDGRRVEGSAFA
VEAVDPVGAGDAFAAGYLAGAVWGLPVEERLRLANLLGASVAASRGDHEGAPYREDLEVLLKATQTFMR
BLAST against CATH

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Domain History Events (3)

Insertion by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Flow stage update by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Insertion by auto on 06 Mar 2006 00:04

Cut based on decision in database "DomChop" on "cathdb"