CATH Domain: 1v0eD03 XML data for domain: 1v0eD03

Molscript image for 1v0eD03
1v0eD03
PDB coordinates for domain 1v0eD03

PDB 1v0e, Chain D, Domain 3

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.30 Elongation Factor Tu (Ef-tu); domain 3
2.40.30.20 Gene3D
2.40.30.20.2
2.40.30.20.2.1
2.40.30.20.2.1.1
2.40.30.20.2.1.1.1
2.40.30.20.2.1.1.1.1

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Segment boundaries for domain 1v0eD03

Chopping figure for domain 1v0eD03
DomainStart PDB ResidueStop PDB Residue
1v0eD01 245 311
1v0eD02 312 424
1v0eD02 510 756
1v0eD03 425 509
1v0eD04 757 910

Structural Neighbourhood (3 entries)

There are 3 matching structural neighberhood comparisons for CATH ID 2.40.30.20.2.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 3 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2ck3D01 80.13 ATP catabolic processParkinson's diseaseOxidative phosphorylationAlzheimer's diseaseMetabolic pathways 2.40.10.170 73 4 85 3.94 4.59
1i8dA01 79.76 Riboflavin metabolismMetabolic pathwaysRiboflavin synthase activityRiboflavin synthase alpha chain [EC:2.5.1.9]Riboflavin synthase alpha chain 2.40.30.20 89 11 85 4.22 4.94
2ey4C00 77.37 Pyrococcus furiosusSmall nucleolar rnp gar1-like proteinRNA-binding protein 2.40.10.230 73 8 81 3.97 4.89
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Displaying entries 1 to 3 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1v0eD03
RSLHLTGGITKAANQRYATIHVPDHGLFVGDFVNFSNSAVTGVSGDMTVATVIDKDNFTVLTPNQQTSDLNNAGKNWHMG
TSFHK
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1v0eD03
RSLHLTGGITKAANQRYATIHVPDHGLFVGDFVNFSNSAVTGVSGDMTVATVIDKDNFTVLTPNQQTSDLNNAGKNWHMG
TSFHK
BLAST against CATH

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Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 19:06

Assigning to "2.40.30.20" based on similarity with "1v0eB03" (NWSI: 100, NWO: 97.7011494252874, SPS: 98.55, SPO: 97, RMSD: 0.23)

Flow stage update by auto on 28 Apr 2006 17:50

NW result present for Domain "1v0eD03"

Flow stage update by auto on 28 Apr 2006 17:45

All required files are present for Domain "1v0eD03"

Flow stage update by auto on 27 Apr 2006 17:31

Beginning processing for Domain "1v0eD03"

Insertion by auto on 06 Mar 2006 00:03

Cut based on decision in database "DomChop" on "cathdb"