CATH Domain: 1uw4A00 XML data for domain: 1uw4A00

Molscript image for 1uw4A00
1uw4A00
PDB coordinates for domain 1uw4A00

PDB 1uw4, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.70 Alpha-Beta Plaits
3.30.70.330 Gene3D
3.30.70.330.10
3.30.70.330.10.1
3.30.70.330.10.1.1
3.30.70.330.10.1.1.1
3.30.70.330.10.1.1.1.1

[top]
Segment boundaries for domain 1uw4A00

Chopping figure for domain 1uw4A00
DomainStart PDB ResidueStop PDB Residue
1uw4A00 50 140

Structural Neighbourhood (51 entries)

There are 51 matching structural neighberhood comparisons for CATH ID 3.30.70.330.10.1.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 51 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2qfjA02 86.44 Homo sapiensPoly(U)-binding-splicing factor PUF60Protein binding 3.30.70.330 87 5 91 3.53 3.87
1fxlA02 85.62 AU-rich element bindingELAV like protein 2/3/4MRNA processingHomo sapiensELAV-like protein 4 3.30.70.330 77 16 84 3.20 3.79
2do0A01 85.60 Protein domain specific bindingIntegral to plasma membraneParaspecklesAlternative nuclear mRNA splicing, via spliceosomeHeterogeneous nuclear ribonucleoprotein M 3.30.70.330 76 13 84 3.03 3.59
1cvjA01 85.47 Poly(A) RNA bindingTranslation activator activityProtein C-terminus bindingMRNA polyadenylationPolyadenylate-binding protein 1 3.30.70.330 77 18 85 3.26 3.81
1oiaA00 85.45 U1 small nuclear ribonucleoprotein ASpliceosomeSpliceosomal complexHomo sapiensProtein binding 3.30.70.330 90 13 88 2.47 2.78
1cvjG02 85.12 Poly(A) RNA bindingProtein C-terminus bindingTranslation activator activityMRNA polyadenylationPolyadenylate-binding protein 1 3.30.70.330 88 10 86 3.20 3.69
1no8A00 85.11 THO complex subunit 4Mus musculusSpliceosomeSingle-stranded DNA bindingRNA binding 3.30.70.330 78 11 86 3.19 3.68
1h2vZ00 85.03 SpliceosomeMRNA cappingMRNA cap binding complexNuclear-transcribed mRNA catabolic process, nonsense-mediated decayNuclear cap-binding protein subunit 2 3.30.70.330 92 8 90 3.44 3.81
1x5oA01 84.82 RNA processingHomo sapiensProtein bindingRNA-binding motif, single-stranded-interacting protein 1 3.30.70.330 86 12 91 3.27 3.59
1x5uA01 84.36 SpliceosomeSpliceosomal complexHomo sapiensSplicing factor 3B subunit 4Splicing factor 3B subunit 4 3.30.70.330 80 13 87 3.49 3.98
1fxlA01 84.33 AU-rich element bindingELAV like protein 2/3/4MRNA processingHomo sapiensELAV-like protein 4 3.30.70.330 71 11 78 3.37 4.27
2pehA01 83.85 Splicing factor 45SpliceosomeHomo sapiensProtein bindingSplicing factor 45 3.30.70.330 83 14 86 2.88 3.32
3feyB00 83.70 SpliceosomeMRNA cappingMRNA cap binding complexNuclear cap-binding protein subunit 2Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay 3.30.70.330 97 8 81 2.61 3.20
2u2fA00 83.62 Splicing factor U2AF 65 kDa subunitSpliceosomeSpliceosomal complexSplicing factor U2AF 65 kDa subunitEnzyme binding 3.30.70.330 85 15 92 4.16 4.51
2jwnA01 82.78 CytoplasmPoly(A) RNA bindingXenopus laevisEmbryonic polyadenylate-binding protein 2-B 3.30.70.330 100 14 77 2.36 3.06
2errA01 82.78 Fox-1 homolog AProtein C-terminus bindingHomo sapiensTrans-Golgi network 3.30.70.330 83 14 90 3.16 3.51
1sjqA00 82.53 Polypyrimidine tract-binding protein 1Poly-pyrimidine tract bindingHeterogeneous nuclear ribonucleoprotein complexNucleolusMRNA processing 3.30.70.330 88 13 85 2.99 3.49
1jmtA00 82.30 Spliceosomal complexSplicing factor U2AF 35 kDa subunitCajal bodyHomo sapiensProtein binding 3.30.70.330 98 12 79 3.01 3.78
2dgsA01 81.93 CytoplasmDAZ-associated protein 1NucleusRNA bindingHomo sapiens 3.30.70.330 89 10 88 4.05 4.56
1hl6C00 81.81 SpliceosomeRNA-binding protein 8AMicrotubule cytoskeleton organizationNucleusDrosophila melanogaster 3.30.70.330 111 6 68 2.73 3.99
1sjrA00 81.28 Polypyrimidine tract-binding protein 1Poly-pyrimidine tract bindingHeterogeneous nuclear ribonucleoprotein complexNucleolusMRNA processing 3.30.70.330 108 8 75 3.02 4.03
1fjeB02 80.88 NucleolinMesocricetus auratus 3.30.70.330 84 15 85 3.71 4.34
1sxlA00 80.03 Sex differentiationDrosophila melanogasterProtein complexPoly-pyrimidine tract bindingNegative regulation of translation 3.30.70.330 97 12 83 3.46 4.14
2u1aA00 79.58 U1 small nuclear ribonucleoprotein ASpliceosomeSpliceosomal complexHomo sapiensProtein binding 3.30.70.330 88 15 84 3.35 3.97
1fjeB01 79.32 NucleolinMesocricetus auratus 3.30.70.330 81 11 80 3.29 4.11
1ufwA00 78.95 Phosphatidylinositol signaling systemSynaptojanin-2Phosphatidylinositol-bisphosphatase [EC:3.1.3.36]Homo sapiensInositol phosphate metabolism 3.30.70.330 95 7 75 3.13 4.13
2nzcA00 78.71 Thermotoga maritimaPutative uncharacterized protein 3.30.70.1150 77 11 82 3.77 4.59
1whvA00 78.42 Mus musculusPoly(A)-specific ribonuclease PARN 3.30.70.330 100 4 69 3.41 4.94
1in0A01 78.19 Hypothetical proteinHaemophilus influenzaeUPF0234 protein HI_1034 3.30.70.860 70 7 76 3.04 3.97
2pd1A01 77.73 Nitrosomonas europaeaPutative uncharacterized protein 3.30.70.900 93 4 88 4.09 4.64
2jz5A00 77.64 Putative uncharacterized protein VPA0419Vibrio parahaemolyticus 3.30.70.860 91 6 80 3.72 4.64
2rilA00 77.25 Antibiotic biosynthesis monooxygenaseShewanella loihica PV-4 3.30.70.900 91 5 90 4.23 4.69
2rhsD06 77.21 Aminoacyl-tRNA biosynthesisStaphylococcus haemolyticus JCSC1435Phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]Phenylalanyl-tRNA synthetase beta chain 3.30.70.380 88 6 77 3.32 4.27
1qm9A01 77.07 Polypyrimidine tract-binding protein 1Poly-pyrimidine tract bindingHeterogeneous nuclear ribonucleoprotein complexNucleolusMRNA processing 3.30.70.330 98 11 79 3.54 4.45
2bbeA00 76.73 Shewanella oneidensisPutative uncharacterized protein 3.30.70.900 92 11 84 4.19 4.94
1l2mA00 76.70 Tomato yellow leaf curl Sardinia virusReplication-associated protein 3.40.1310.20 118 8 72 3.35 4.65
1kohA01 76.16 Nuclear RNA export factor 1Homo sapiensProtein binding 3.30.70.330 97 10 80 3.55 4.41
1b7yB06 76.13 Aminoacyl-tRNA biosynthesisPhenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]Phenylalanyl-tRNA synthetase beta chainThermus thermophilus 3.30.70.380 86 4 74 3.58 4.81
1b4bA00 76.05 Geobacillus stearothermophilusArginine repressor 3.30.1360.40 71 8 64 2.92 4.53
1vlyA02 75.50 RNA modificationTRNA-modifying protein ygfZFolic acid bindingEscherichia coli K-12 3.30.70.1400 84 1 67 3.34 4.93
1lfpA03 75.43 UPF0082 protein aq_1575Aquifex aeolicus 3.30.70.980 73 9 70 3.19 4.56
1yx2A02 75.40 Nitrogen metabolismAminomethyltransferase [EC:2.1.2.10]One carbon pool by folateBacillus subtilisGlycine, serine and threonine metabolism 3.30.70.1400 81 4 66 2.93 4.39
3bf4A01 75.27 Ralstonia eutropha JMP134Ethyl tert-butyl ether degradation EthD 3.30.70.900 92 6 91 4.55 4.98
1vk8A00 75.03 Thermotoga maritimaPutative uncharacterized protein 3.30.70.930 91 8 80 4.01 5.00
1m1hA01 74.44 Transcriptional antiterminator NusGTranscription antitermination protein nusGAquifex aeolicus 3.30.70.940 100 5 71 3.48 4.90
1gmuA01 74.40 Klebsiella aerogenesUrease accessory protein ureE 3.30.70.790 67 8 67 3.22 4.75
1cvjH02 73.94 Poly(A) RNA bindingProtein C-terminus bindingMRNA polyadenylationTranslation activator activityPolyadenylate-binding protein 1 3.30.70.330 52 9 46 2.28 4.89
1v8cA02 73.83 Threonine synthaseThermus thermophilus 3.30.1370.80 80 3 68 3.11 4.51
1utaA00 72.88 Membrane fractionCell cycle cytokinesisCell division protein FtsNCell division protein ftsNProtein binding 3.30.70.1070 77 10 76 3.71 4.84
1lfwA03 72.42 Lactobacillus delbrueckii subsp. lactisBeta-Ala-Xaa dipeptidase 3.30.70.360 88 10 58 2.79 4.74
1ft8E00 69.37 Nuclear RNA export factor 1Homo sapiensProtein binding 3.30.70.330 44 11 44 2.17 4.88
[1]
Displaying entries 1 to 51 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|1uw4A00
LSKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPA
IVEFAPFQKAA
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|1uw4A00
LSKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPA
IVEFAPFQKAA
BLAST against CATH

[top]
Domain History Events (3)

Insertion by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Flow stage update by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Insertion by auto on 06 Mar 2006 00:02

Cut based on decision in database "DomChop" on "cathdb"