CATH Domain: 1us5A02 XML data for domain: 1us5A02

Molscript image for 1us5A02
1us5A02
PDB coordinates for domain 1us5A02

PDB 1us5, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.190 D-Maltodextrin-Binding Protein; domain 2
3.40.190.10 Periplasmic binding protein-like II Gene3D
3.40.190.10.11
3.40.190.10.11.1
3.40.190.10.11.1.1
3.40.190.10.11.1.1.1
3.40.190.10.11.1.1.1.1

Segment boundaries for domain 1us5A02

Chopping figure for domain 1us5A02
DomainStart PDB ResidueStop PDB Residue
1us5A01 17 108
1us5A01 248 313
1us5A02 109 247

Structural Neighbourhood (18 entries)

There are 18 matching structural neighberhood comparisons for CATH ID 3.40.190.10.11.1.1.1.1 (SIMAX score < 5)

Displaying entries 1 to 18 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1wdnA01 78.58 ABC transportersGlutamine transport system substrate-binding proteinGlutamine-binding periplasmic proteinProtein bindingEscherichia coli K-12 3.40.190.10 96 17 67 2.69 3.98
1lstA02 78.37 ABC transportersLysine-arginine-ornithine-binding periplasmic proteinSalmonella enterica subsp. enterica serovar TyphimuriumLysine/arginine/ornithine transport system substrate-binding protein 3.40.190.10 101 17 69 3.17 4.59
2o1mA02 78.27 Bacillus subtilisL-cystine-binding protein tcyKPolar amino acid transport system substrate-binding protein 3.40.190.10 121 16 71 3.26 4.53
1ii5A02 78.18 Polar amino acid transport system substrate-binding proteinSynechocystis sp. PCC 6803Slr1257 protein 3.40.190.10 93 18 64 3.06 4.73
1r9lA02 77.97 ABC transportersGlycine betaine/proline transport system substrate-binding proteinGlycine betaine-binding periplasmic proteinProtein bindingEscherichia coli K-12 3.40.190.100 141 11 84 4.01 4.75
3gzgA02 76.99 Molybdate transport system substrate-binding proteinMolybdate-binding periplasmic protein; permeaseABC transportersXanthomonas axonopodis pv. citri 3.40.190.10 112 12 69 3.21 4.60
1ixcA03 76.62 LysR-type regulatory proteinCupriavidus necator 3.40.190.10 105 12 69 2.90 4.16
1al3A01 76.60 Klebsiella pneumoniaeLysR family transcriptional regulator, cys regulon transcriptional activatorHTH-type transcriptional regulator cysB 3.40.190.10 101 7 67 2.95 4.36
1pb7A02 76.48 Calcium signaling pathwayRattus norvegicusAlzheimer's diseaseProtein bindingRhythmic process 3.40.190.10 108 11 71 3.29 4.62
1mqiA01 76.10 Rattus norvegicusGlutamate receptor 2Synaptic transmissionPerikaryonDendrite cytoplasm 3.40.190.10 109 11 71 3.50 4.87
1sw5A02 75.94 Osmoprotection protein (ProX)Archaeoglobus fulgidusOsmoprotectant transport system substrate-binding proteinABC transporters 3.40.190.120 104 8 69 3.29 4.76
1nh8A02 75.56 Histidine metabolismMetabolic pathwaysATP phosphoribosyltransferaseATP phosphoribosyltransferase [EC:2.4.2.17]Mycobacterium tuberculosis 3.40.190.10 86 22 61 2.86 4.62
1ve4A02 75.22 Histidine metabolismMetabolic pathwaysThermus thermophilus HB27ATP phosphoribosyltransferaseATP phosphoribosyltransferase [EC:2.4.2.17] 3.40.190.10 83 15 58 2.75 4.72
2ieeA02 75.03 Bacillus subtilisProbable ABC transporter extracellular-binding protein yckBPolar amino acid transport system substrate-binding protein 3.40.190.10 99 17 66 3.24 4.84
2ql3A02 75.00 Rhodococcus jostii RHA1Probable transcriptional regulator, LysR family protein 3.40.190.10 103 11 65 2.62 4.00
2ozzA02 74.78 Shigella flexneriPutative uncharacterized protein yhfZ 3.40.190.10 89 15 64 3.19 4.98
1o63A02 74.54 Histidine metabolismMetabolic pathwaysThermotoga maritimaATP phosphoribosyltransferaseATP phosphoribosyltransferase [EC:2.4.2.17] 3.40.190.10 81 13 58 2.66 4.56
3fzvA03 72.79 Probable transcriptional regulatorPseudomonas aeruginosa 3.40.190.10 102 10 66 2.89 4.37
Displaying entries 1 to 18 (page 1 of 1)


Domain ATOM Sequence

>pdb|1us5A02
YPEVVHVVARKDAGIRTVADLKGKRVVVGDVGSGTEQNARQILEAYGLTFDDLGQAIRVSASQGIQLMQDKRADALFYTV
GLGASAIQQLALTTPIALVAVDLNRIQAIAKKYPFYVGFNIPGGTYKGVDVTTPTVAVQ    

Domain COMBS Sequence

>pdb|1us5A02
YPEVVHVVARKDAGIRTVADLKGKRVVVGDVGSGTEQNARQILEAYGLTFDDLGQAIRVSASQGIQLMQDKRADALFYTV
GLGASAIQQLALTTPIALVAVDLNRIQAIAKKYPFYVGFNIPGGTYKGVDVTTPTVAVQ    

Domain History Events (3)

Insertion by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Flow stage update by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Insertion by auto on 06 Mar 2006 00:01

Cut based on decision in database "DomChop" on "cathdb"