CATH Domain: 1us5A01 XML data for domain: 1us5A01

Molscript image for 1us5A01
1us5A01
PDB coordinates for domain 1us5A01

PDB 1us5, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.190 D-Maltodextrin-Binding Protein; domain 2
3.40.190.10 Periplasmic binding protein-like II Gene3D
3.40.190.10.17
3.40.190.10.17.1
3.40.190.10.17.1.1
3.40.190.10.17.1.1.1
3.40.190.10.17.1.1.1.1

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Segment boundaries for domain 1us5A01

Chopping figure for domain 1us5A01
DomainStart PDB ResidueStop PDB Residue
1us5A01 17 108
1us5A01 248 313
1us5A02 109 247

Structural Neighbourhood (14 entries)

There are 14 matching structural neighberhood comparisons for CATH ID 3.40.190.10.17.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 14 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1p99A01 80.39 ABC transportersLactococcal lipoproteinD-methionine transport system substrate-binding proteinStaphylococcus aureus subsp. aureus Mu50 3.40.190.10 144 10 80 3.53 4.40
1xs5A01 80.31 ABC transportersTreponema pallidumMembrane lipoprotein TpN32D-methionine transport system substrate-binding protein 3.40.190.10 134 13 74 2.92 3.92
3cvgA01 78.23 3.40.190.10 144 9 75 3.67 4.84
1pc3A01 78.17 Two-component systemABC transportersPhosphate-binding protein pstS 1Phosphate transport system substrate-binding proteinMycobacterium tuberculosis 3.40.190.10 141 14 82 3.79 4.58
1pdaA01 76.24 Metabolic pathwaysPorphyrin and chlorophyll metabolismHydroxymethylbilane synthase activityEscherichia coli K-12Cytoplasm 3.40.190.10 109 5 62 2.84 4.55
1i6aA01 75.97 LysR family transcriptional regulator, hydrogen peroxide-inducible genes activatorEscherichia coli K-12Hydrogen peroxide-inducible genes activator 3.40.190.10 108 7 64 3.07 4.73
1lstA01 75.91 ABC transportersLysine-arginine-ornithine-binding periplasmic proteinSalmonella enterica subsp. enterica serovar TyphimuriumLysine/arginine/ornithine transport system substrate-binding protein 3.40.190.10 137 10 75 3.35 4.46
3gzgA01 75.84 Molybdate transport system substrate-binding proteinMolybdate-binding periplasmic protein; permeaseABC transportersXanthomonas axonopodis pv. citri 3.40.190.10 120 12 71 3.42 4.75
1twyA01 75.74 Two-component systemABC transportersVibrio choleraePhosphate transport system substrate-binding proteinABC transporter, periplasmic substrate-binding protein 3.40.190.10 112 14 69 3.06 4.41
3fd3A01 75.54 Agrobacterium tumefaciens str. C58LysR family transcriptional regulator, chromosome initiation inhibitorTranscriptional regulator, LysR family 3.40.190.10 104 8 63 3.10 4.92
2ql3A01 75.51 Rhodococcus jostii RHA1Probable transcriptional regulator, LysR family protein 3.40.190.10 97 10 59 2.88 4.81
2pyyB01 74.48 Nostoc punctiforme PCC 73102Ionotropic glutamate receptor bacterial homologue 3.40.190.10 125 8 71 3.44 4.78
2o1mA01 74.01 Bacillus subtilisL-cystine-binding protein tcyKPolar amino acid transport system substrate-binding protein 3.40.190.10 108 9 60 2.90 4.79
2qmxA01 73.35 Prephenate dehydratase [EC:4.2.1.51]Phenylalanine, tyrosine and tryptophan biosynthesisChlorobaculum tepidumMetabolic pathwaysPrephenate dehydratase 3.40.190.10 90 10 45 2.08 4.54
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Displaying entries 1 to 14 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1us5A01
AQEFITIGSGSTTGVYFPVATGIAKLVNDANVGIRANARSTGGSVANINAINAGEFEMALAQNDIAYYAYQGCCIPAFEG
KPVKTIRALAALAMLIASERLSEETVYKFMKAVFGNLEAFKKIHPNLERFFGLEKAVKGLPIPLHPGAERFYKEAGVL
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1us5A01
AQEFITIGSGSTTGVYFPVATGIAKLVNDANVGIRANARSTGGSVANINAINAGEFEMALAQNDIAYYAYQGCCIPAFEG
KPVKTIRALAALAMLIASERLSEETVYKFMKAVFGNLEAFKKIHPNLERFFGLEKAVKGLPIPLHPGAERFYKEAGVL
BLAST against CATH

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Domain History Events (3)

Insertion by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Flow stage update by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Insertion by auto on 06 Mar 2006 00:01

Cut based on decision in database "DomChop" on "cathdb"