CATH Domain: 1urrA00 XML data for domain: 1urrA00

Molscript image for 1urrA00
1urrA00
PDB coordinates for domain 1urrA00

PDB 1urr, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.70 Alpha-Beta Plaits
3.30.70.100 Gene3D
3.30.70.100.9
3.30.70.100.9.2
3.30.70.100.9.2.1
3.30.70.100.9.2.1.1
3.30.70.100.9.2.1.1.1

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Segment boundaries for domain 1urrA00

Chopping figure for domain 1urrA00
DomainStart PDB ResidueStop PDB Residue
1urrA00 2 98

Structural Neighbourhood (72 entries)

There are 72 matching structural neighberhood comparisons for CATH ID 3.30.70.100.9.2.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 72 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1u8sA01 83.20 Glycine cleavage system transcriptional repressor, putativeGlycine cleavage system transcriptional repressorVibrio cholerae 3.30.70.260 86 9 86 3.21 3.73
1y7pB01 82.88 Archaeoglobus fulgidusUncharacterized protein AF_1403 3.30.70.260 80 8 75 1.95 2.58
2f1fA01 82.75 Valine, leucine and isoleucine biosynthesisMetabolic pathwaysButanoate metabolismC5-Branched dibasic acid metabolismPantothenate and CoA biosynthesis 3.30.70.260 79 5 77 2.46 3.17
1sc6A03 81.97 Glycine, serine and threonine metabolismMetabolic pathwaysD-3-phosphoglycerate dehydrogenase [EC:1.1.1.95]D-3-phosphoglycerate dehydrogenaseEscherichia coli K-12 3.30.70.260 79 5 74 3.35 4.50
2nyiA02 81.88 3.30.70.260 89 6 81 2.66 3.25
1q5yD00 81.26 CopG family transcriptional regulator, nickel-responsive regulatorNickel-responsive regulatorProtein bindingEscherichia coli K-12 3.30.70.1150 80 10 80 2.47 3.06
1vi7A02 81.01 IMPACT family member yigZProtein bindingEscherichia coli K-12 3.30.70.240 71 9 74 3.33 4.47
1u8sA02 80.82 Glycine cleavage system transcriptional repressor, putativeGlycine cleavage system transcriptional repressorVibrio cholerae 3.30.70.260 84 4 82 2.86 3.45
2nyiA01 80.79 3.30.70.260 77 9 79 3.51 4.40
1u0sA00 80.71 Thermotoga maritimaBacterial chemotaxisTwo-component systemTwo-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]Protein binding 3.30.70.1110 86 6 78 3.05 3.87
2ia0B02 80.67 Pyrococcus furiosusUncharacterized HTH-type transcriptional regulator PF0864 3.30.70.920 99 6 83 3.31 3.95
1in0A01 80.55 Hypothetical proteinHaemophilus influenzaeUPF0234 protein HI_1034 3.30.70.860 70 14 71 2.90 4.07
1zzkA00 80.53 SpliceosomeHeterogeneous nuclear ribonucleoprotein KRNA bindingHeterogeneous nuclear ribonucleoprotein KProtein binding 3.30.1370.10 80 10 76 2.80 3.66
1s99A01 80.42 Bacillus subtilisPutative HMP/thiamine-binding protein ykoF 3.30.70.930 77 9 77 3.29 4.24
2qmwA03 80.38 Phenylalanine, tyrosine and tryptophan biosynthesisMetabolic pathwaysPrephenate dehydratase [EC:4.2.1.51]Similar to chorismate mutaseStaphylococcus aureus subsp. aureus Mu50 3.30.70.260 73 10 70 2.36 3.36
2w25A02 80.36 Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory proteinLeucine-responsive regulatory proteinMycobacterium tuberculosis 3.30.70.920 81 7 74 2.69 3.61
2oauA03 80.14 Small conductance mechanosensitive ion channel, MscS familySmall-conductance mechanosensitive channelMechanically-gated ion channel activityIntegral to membraneEscherichia coli K-12 3.30.70.100 86 3 73 2.67 3.64
3ce8A00 80.09 Shewanella baltica OS155Putative uncharacterized protein 3.30.70.120 87 8 81 3.67 4.48
2nzcA00 79.93 Thermotoga maritimaPutative uncharacterized protein 3.30.70.1150 77 3 77 3.15 4.06
1dtjA00 79.93 RNA-binding protein Nova-2Homo sapiens 3.30.1370.10 74 9 70 3.03 4.32
1rwuA00 79.81 Hypothetical proteinUPF0250 protein ybeDEscherichia coli K-12 3.30.70.1460 87 6 74 2.62 3.52
1mlaA01 79.71 Fatty acid biosynthesisMetabolic pathwaysMalonyl CoA-acyl carrier protein transacylase[acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]Escherichia coli K-12 3.30.70.250 73 9 69 2.80 4.05
1zpvB00 79.67 ACT domain-containing proteinUPF0237 protein SP_0238Streptococcus pneumoniae 3.30.70.260 81 12 82 3.96 4.77
1u7lA01 79.48 V-type H+-transporting ATPase subunit C [EC:3.6.3.14]Oxidative phosphorylationVacuolar acidificationProtein bindingVacuolar proton-transporting V-type ATPase, V1 domain 3.30.70.1180 91 3 79 3.61 4.52
1xmbA02 79.44 Auxin metabolic processArabidopsis thalianaIAA-Ala conjugate hydrolase activityIAA-amino acid hydrolase ILR1-like 2 3.30.70.360 101 9 79 3.25 4.10
2anrA01 79.36 RNA-binding protein Nova-1Synaptic transmissionHomo sapiensLocomotory behavior 3.30.1370.10 79 8 73 3.46 4.71
1lfwA03 79.32 Lactobacillus delbrueckii subsp. lactisBeta-Ala-Xaa dipeptidase 3.30.70.360 88 9 68 2.40 3.52
1vr6A01 79.24 Phenylalanine, tyrosine and tryptophan biosynthesisMetabolic pathwaysThermotoga maritima3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]Phospho-2-dehydro-3-deoxyheptonate aldolase 3.30.70.1140 75 5 78 3.87 4.92
1i1gA02 79.10 Pyrococcus furiosusHTH-type transcriptional regulator lrpALrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA 3.30.70.920 77 6 78 3.62 4.60
2rb7A02 78.77 Peptidase, M20/M25/M40 familyDesulfovibrio desulfuricans subsp. desulfuricans str. G20 3.30.70.360 98 1 73 2.85 3.88
2qrrA00 78.75 D-methionine transport system ATP-binding proteinMethionine import ATP-binding protein MetNVibrio parahaemolyticusABC transporters 3.30.70.260 93 8 76 3.32 4.33
1j27A00 78.63 Hypothetical proteinThermus thermophilusPutative uncharacterized protein 3.30.70.1120 98 4 82 3.49 4.22
2anrA02 78.50 RNA-binding protein Nova-1Synaptic transmissionHomo sapiensLocomotory behavior 3.30.1370.10 74 9 73 3.49 4.75
1cg2A02 78.49 Pseudomonas sp. RS-16Carboxypeptidase G2 3.30.70.360 110 10 70 3.06 4.32
1yjrA00 78.45 Cu2+-exporting ATPase [EC:3.6.3.4]Copper-dependent protein bindingCopper-transporting ATPase 1Cellular copper ion homeostasisTrans-Golgi network 3.30.70.100 75 9 74 3.20 4.30
2rhsD06 78.44 Aminoacyl-tRNA biosynthesisStaphylococcus haemolyticus JCSC1435Phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]Phenylalanyl-tRNA synthetase beta chain 3.30.70.380 88 7 68 2.59 3.80
2g9oA00 78.33 Cu2+-exporting ATPase [EC:3.6.3.4]Copper-dependent protein bindingCopper-transporting ATPase 1Trans-Golgi networkCellular copper ion homeostasis 3.30.70.100 77 7 77 3.43 4.42
2axyA00 77.78 Poly(rC)-binding protein 2CytoplasmRNA bindingHomo sapiensProtein binding 3.30.1370.10 69 10 68 3.03 4.45
1z2lA02 77.76 Purine metabolismZinc ion bindingProtein homodimerization activityAllantoate deiminase [EC:3.5.3.9]Manganese ion binding 3.30.70.360 115 6 70 3.07 4.36
3cedA00 77.50 ABC transportersD-methionine transport system ATP-binding proteinMethionine import ATP-binding protein MetN 2Staphylococcus aureus subsp. aureus Mu50 3.30.70.260 97 1 74 3.22 4.34
1u7lA03 77.50 V-type H+-transporting ATPase subunit C [EC:3.6.3.14]Vacuolar acidificationOxidative phosphorylationVacuolar proton-transporting V-type ATPase, V1 domainProtein binding 3.30.70.100 90 8 71 3.26 4.57
1o4uA01 77.45 Thermotoga maritimaNicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]Nicotinate-nucleotide pyrophosphorylaseNicotinate and nicotinamide metabolismMetabolic pathways 3.90.1170.20 118 10 67 3.19 4.71
1x7vC00 77.43 Pseudomonas aeruginosaPutative uncharacterized protein 3.30.70.900 97 6 84 4.18 4.94
1nu4A00 77.37 U1 small nuclear ribonucleoprotein ASpliceosomeSpliceosomal complexHomo sapiensProtein binding 3.30.70.330 91 8 81 3.91 4.77
1lfpA03 77.21 UPF0082 protein aq_1575Aquifex aeolicus 3.30.70.980 73 9 73 3.67 5.00
2x3dF01 77.06 Hypothetical proteinSulfolobus solfataricusPutative uncharacterized protein 3.30.70.1340 84 11 85 2.92 3.43
2ivyA01 77.03 Sulfolobus solfataricusPutative uncharacterized protein 3.30.70.240 74 12 69 3.39 4.90
3bn7A00 76.96 Caulobacter vibrioidesPutative uncharacterized protein 3.30.70.900 96 7 81 3.99 4.91
2pd1A01 76.90 Nitrosomonas europaeaPutative uncharacterized protein 3.30.70.900 93 4 84 3.58 4.26
3bm7A00 76.85 Caulobacter vibrioidesPutative uncharacterized protein 3.30.70.900 101 7 81 4.03 4.96
2vd3A03 76.77 Methanothermobacter thermautotrophicus str. Delta HATP phosphoribosyltransferaseATP phosphoribosyltransferase [EC:2.4.2.17]Histidine metabolismMetabolic pathways 3.30.70.120 74 12 74 3.27 4.39
1mwqA00 76.58 Hypothetical proteinHaemophilus influenzaeUncharacterized protein HI_0828 3.30.70.1060 98 6 79 3.74 4.70
1vigA00 76.44 CytoplasmVigilinCholesterol metabolic processPlasma membraneHomo sapiens 3.30.1370.10 71 9 70 3.05 4.34
1nh8A03 76.27 Histidine metabolismMetabolic pathwaysATP phosphoribosyltransferaseATP phosphoribosyltransferase [EC:2.4.2.17]Mycobacterium tuberculosis 3.30.70.120 67 13 68 3.24 4.76
1q8bA00 75.88 Bacillus subtilisUncharacterized protein yjcS 3.30.70.900 89 4 82 3.54 4.27
1no8A00 75.87 THO complex subunit 4Mus musculusSpliceosomeSingle-stranded DNA bindingRNA binding 3.30.70.330 78 6 77 3.68 4.74
2zd1A02 75.81 Human immunodeficiency virus type 1 BH10Gag-Pol polyprotein 3.30.70.270 94 7 78 3.54 4.50
2do0A01 75.80 Protein domain specific bindingIntegral to plasma membraneParaspecklesAlternative nuclear mRNA splicing, via spliceosomeHeterogeneous nuclear ribonucleoprotein M 3.30.70.330 76 6 74 3.39 4.55
3c19A01 75.78 Methanopyrus kandleriUncharacterized conserved protein 3.30.70.1380 98 3 81 3.64 4.46
1harA02 75.69 Human immunodeficiency virus type 1 BH10Gag-Pol polyprotein 3.30.70.270 69 5 65 3.15 4.78
1qapA01 75.62 Nicotinate and nicotinamide metabolismMetabolic pathwaysNicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]Salmonella enterica subsp. enterica serovar TyphimuriumNicotinate-nucleotide pyrophosphorylase [carboxylating] 3.90.1170.20 122 7 63 3.15 4.93
1eayD00 75.46 Bacterial chemotaxisTwo-component systemTwo-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]Escherichia coli K-12Chemotaxis protein cheA 3.30.70.400 69 10 71 3.32 4.66
2pgcA01 75.38 3.30.70.900 95 6 81 3.95 4.87
1sxlA00 75.14 Sex differentiationDrosophila melanogasterProtein complexPoly-pyrimidine tract bindingNegative regulation of translation 3.30.70.330 97 7 82 3.58 4.34
1cvjA01 74.96 Poly(A) RNA bindingTranslation activator activityProtein C-terminus bindingMRNA polyadenylationPolyadenylate-binding protein 1 3.30.70.330 77 5 72 3.56 4.92
1lfwA02 74.13 Lactobacillus delbrueckii subsp. lactisBeta-Ala-Xaa dipeptidase 3.30.70.360 106 9 71 3.39 4.73
1vgyA02 74.11 Succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]Neisseria meningitidis serogroup BLysine biosynthesisMetabolic pathwaysSuccinyl-diaminopimelate desuccinylase 3.30.70.360 114 5 67 3.33 4.93
1l3kA01 73.91 Heterogeneous nuclear ribonucleoprotein A1NucleolusProtein bindingCytoplasmSpliceosome 3.30.70.330 84 7 77 3.29 4.24
2ofhX00 73.31 Cd2+/Zn2+-exporting ATPase [EC:3.6.3.3 3.6.3.5]Zinc-transporting ATPaseSynechocystis sp. PCC 6803 3.30.70.100 71 5 73 3.42 4.66
1fxlA01 73.31 AU-rich element bindingELAV like protein 2/3/4MRNA processingHomo sapiensELAV-like protein 4 3.30.70.330 71 8 68 2.92 4.29
1l3kA02 73.23 Heterogeneous nuclear ribonucleoprotein A1NucleolusProtein bindingCytoplasmSpliceosome 3.30.70.330 78 7 74 3.61 4.85
1opzA00 72.17 Cu2+-exporting ATPase [EC:3.6.3.4]Bacillus subtilisCopper-exporting P-type ATPase A 3.30.70.100 76 7 75 3.35 4.44
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Displaying entries 1 to 72 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1urrA00
VAKQIFALDFEIFGRVQGVFFRKHTSHEAKRLGVRGWCMNTRDGTVKGQLEAPMMNLMEMKHWLENNRIPNAKVSKAEFS
QIQEIEDYTFTSFDIKH
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1urrA00
MAGSGVAKQIFALDFEIFGRVQGVFFRKHTSHEAKRLGVRGWCMNTRDGTVKGQLEAPMMNLMEMKHWLENNRIPNAKVS
KAEFSQIQEIEDYTFTSFDIKH
BLAST against CATH

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Domain History Events (3)

Insertion by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Flow stage update by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Insertion by auto on 06 Mar 2006 00:01

Cut based on decision in database "DomChop" on "cathdb"