CATH Domain: 1urqC00 XML data for domain: 1urqC00

Molscript image for 1urqC00
1urqC00
PDB coordinates for domain 1urqC00

PDB 1urq, Chain C, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.20 Up-down Bundle
1.20.5 Single alpha-helices involved in coiled-coils or other helix-helix interfaces
1.20.5.110 Gene3D
1.20.5.110.7
1.20.5.110.7.1
1.20.5.110.7.1.1
1.20.5.110.7.1.1.1
1.20.5.110.7.1.1.1.1

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Segment boundaries for domain 1urqC00

Chopping figure for domain 1urqC00
DomainStart PDB ResidueStop PDB Residue
1urqC00 16 83

Structural Neighbourhood (71 entries)

There are 71 matching structural neighberhood comparisons for CATH ID 1.20.5.110.7.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 71 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1uixA00 88.44 Chemokine signaling pathwayRho-associated, coiled-coil containing protein kinase [EC:2.7.11.1]Leukocyte transendothelial migrationWnt signaling pathwayTGF-beta signaling pathway 1.20.5.730 68 14 77 1.20 1.54
1gk4C00 87.79 Cellular component movementProtein C-terminus bindingIntermediate filamentVimentinCytosol 1.20.5.170 70 8 85 2.80 3.27
1gu4A00 86.91 Transcription from RNA polymerase II promoterAcute-phase responseHomo sapiensCCAAT/enhancer-binding protein betaImmune response 1.20.5.170 65 7 89 2.77 3.09
1svfC00 86.77 Simian virus 5 (strain W3)Fusion glycoprotein F0 1.20.5.300 62 9 85 2.64 3.10
2e42A00 86.73 Transcription from RNA polymerase II promoterAcute-phase responseHomo sapiensCCAAT/enhancer-binding protein betaImmune response 1.20.5.170 65 7 89 2.86 3.19
1favA00 86.31 NucleusPositive regulation of RNA polymerase II transcriptional preinitiation complex assemblyEnvelope glycoprotein gp160General control protein GCN4General control protein GCN4 1.10.287.210 78 2 70 0.84 1.19
1jocA01 86.15 Zinc ion bindingVesicle fusionMembrane fractionSynaptic vesicle to endosome fusionProtein homodimerization activity 1.20.5.390 60 8 88 2.39 2.71
2b9bA04 86.07 Simian virus 5 (strain W3)Fusion glycoprotein F0 1.20.5.1070 62 6 70 2.31 3.27
1gmjD00 85.34 Negative regulation of hydrolase activityProtein homodimerization activityATPase inhibitor activityBos taurusCalmodulin binding 1.20.5.500 56 5 80 2.61 3.23
1jnmA00 85.26 Pathways in cancerChagas diseaseNeurotrophin signaling pathwayB cell receptor signaling pathwayT cell receptor signaling pathway 1.20.5.170 56 14 67 1.12 1.66
1r8eA03 85.02 Multidrug-efflux transporter 1 regulatorBacillus subtilis 1.20.5.490 44 9 64 2.82 4.36
1sfcH00 84.87 SNARE interactions in vesicular transportSleepRattus norvegicusRegulation of synaptogenesisVoltage-gated potassium channel complex 1.20.5.110 72 7 77 1.52 1.95
1jcdB00 84.74 Peptidoglycan bindingMurein lipoproteinMajor outer membrane lipoprotein LppProtein bindingEscherichia coli K-12 1.20.5.190 52 3 73 1.88 2.56
2p2uA01 84.70 Desulfovibrio vulgaris str. HildenboroughHost-nuclease inhibitor protein Gam, putative 1.20.5.170 69 7 89 3.09 3.44
1n2dC00 84.63 Mating projection tipGolgi inheritanceActin filament bindingVesicle-mediated transportMyosin-2 1.20.5.190 48 4 64 1.10 1.70
1junA00 84.61 Pathways in cancerChagas diseaseNeurotrophin signaling pathwayB cell receptor signaling pathwayT cell receptor signaling pathway 1.20.5.170 43 4 63 1.17 1.85
1t3jA00 84.45 Mus musculusMitochondrial fusionMitofusin-1Protein binding 1.20.5.110 62 6 63 0.97 1.53
1d7mA00 84.30 Cortexillin-1Response to bacteriumProtein homodimerization activityActin filament bundle assemblyActin filament network formation 1.20.5.1050 101 16 67 1.34 1.99
1dh3A00 84.27 Positive regulation of multicellular organism growthLactationRegulation of cell sizeAxonogenesisMus musculus 1.20.5.170 55 14 76 1.51 1.97
1a02F00 84.12 Promoter bindingPathways in cancerChagas diseaseProto-oncogene protein c-fosB cell receptor signaling pathway 1.20.5.170 53 11 77 2.35 3.02
1ybkA00 83.84 TetrabrachionStaphylothermus marinus 1.20.5.1060 52 1 76 2.05 2.68
1ik7A00 83.77 Regulation of proteolysisProtein domain specific bindingHemocyte proliferationPlasma membraneZygotic specification of dorsal/ventral axis 1.20.5.530 52 5 75 2.25 3.00
2wpqA00 83.08 Salmonella enterica subsp. enterica serovar TyphimuriumPutative inner membrane protein 1.20.5.980 99 13 68 1.37 1.99
3effK02 82.86 Streptomyces lividansVoltage-gated potassium channel 1.20.5.440 45 2 66 1.37 2.07
1jekA00 82.82 Visna/maedi virus EV1 KV1772Envelope glycoprotein gp160 1.20.5.440 40 10 57 0.97 1.69
3e7kA00 82.51 Rattus norvegicusCalcium channel activityCalcium ion transportIntegral to membraneProtein binding 1.20.5.1010 54 0 64 1.87 2.89
3ii6A02 82.14 DNA ligation involved in DNA repairProtein C-terminus bindingDNA-dependent protein kinase-DNA ligase 4 complexResponse to X-rayDouble-strand break repair via nonhomologous end joining 1.20.5.370 58 5 70 2.59 3.67
1no4C00 81.72 Bacillus phage phi29Head morphogenesis protein 1.20.5.400 73 5 69 2.67 3.82
1czqA00 81.67 1.20.5.170 45 2 66 2.50 3.78
2ifoA00 81.33 Xanthomonas phage XfCapsid protein G8P 1.20.5.230 46 6 67 1.83 2.71
1ci6B00 81.29 Mammary gland epithelial cell differentiationMammary gland epithelial cell proliferationCytoplasmProtein heterodimerization activitySequence-specific enhancer binding RNA polymerase II transcription factor activity 1.20.5.170 47 14 66 2.18 3.29
3hd7B00 81.05 Myosin head/neck bindingActomyosinProtein domain specific bindingRattus norvegicusProtein heterodimerization activity 1.20.5.110 98 5 67 1.93 2.87
2basA02 80.76 Bacillus subtilisUncharacterized EAL-domain containing protein ykuI 1.20.5.170 46 2 66 2.40 3.63
1hf9A00 80.70 Protein homodimerization activityNegative regulation of hydrolase activityATPase inhibitor activityBos taurusATPase binding 1.20.5.500 41 7 60 1.69 2.80
1tiiC00 79.86 Heat-labile enterotoxin IIB, A chainEscherichia coli 1.20.5.200 36 0 52 1.60 3.02
2w83C00 79.78 Homo sapiensIntegral to membraneC-Jun-amino-terminal kinase-interacting protein 4SpermatogenesisPositive regulation of cell migration 1.20.5.1000 67 4 54 1.35 2.48
1piqA00 79.63 NucleusPositive regulation of RNA polymerase II transcriptional preinitiation complex assemblyGeneral control protein GCN4General control protein GCN4Specific RNA polymerase II transcription factor activity 1.20.5.170 31 0 45 0.58 1.27
1kilE00 79.52 Complexin-1Syntaxin-1 bindingRattus norvegicusDendriteSynaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex 1.20.5.580 41 14 60 2.19 3.63
1gl2D00 79.16 Syntaxin-8Rattus norvegicusProtein bindingSyntaxin 8SNARE interactions in vesicular transport 1.20.5.110 54 5 55 1.95 3.49
1pl5A00 79.14 Chromatin silencing complexLoss of chromatin silencing involved in replicative cell agingChromatin silencingDouble-strand break repair via nonhomologous end joiningDouble-stranded DNA binding 1.20.5.730 75 8 69 3.42 4.93
2p7jB01 79.12 Vibrio parahaemolyticusPutative sensory box/GGDEF family protein 1.20.5.170 39 17 44 0.40 0.91
2dw3A01 78.98 Intrinsic membrane protein pufXRhodobacter sphaeroides 2.4.1 1.20.5.920 55 1 77 3.81 4.89
1u57A00 78.74 Human immunodeficiency virus type 1 lw12.3 isolateGag polyprotein 1.20.5.760 48 6 66 2.35 3.55
1ezjA02 78.74 Sendai virus (strain Harris)Phosphoprotein 1.10.287.340 52 3 51 1.90 3.69
1gl2A00 78.23 Rattus norvegicusProtein complex assemblyVesicle-associated membrane protein 8Cellular membrane fusionVesicle-associated membrane protein 8 1.20.5.110 53 7 60 2.53 4.20
1m56D00 78.10 Rhodobacter sphaeroidesAa3-type cytochrome c oxidase subunit IV 1.20.5.160 42 4 61 2.66 4.31
1ifpA00 78.02 Pseudomonas phage Pf3Capsid protein G8P 1.20.5.440 44 13 64 3.13 4.84
2zxeB01 78.01 1.20.5.170 35 14 51 2.55 4.95
1pfiA00 77.86 Pseudomonas phage Pf1Capsid protein G8P 1.20.5.230 46 6 55 1.98 3.54
1gk6B00 77.66 Positive regulation of RNA polymerase II transcriptional preinitiation complex assemblyIntermediate filamentVimentinCytosolPositive regulation of gene-specific transcription from RNA polymerase II promoter 1.20.5.170 52 5 47 1.07 2.27
1owaA01 76.62 Structural constituent of cytoskeletonSpectrinHomo sapiensSpectrin-associated cytoskeletonActin filament organization 1.20.5.170 32 15 47 1.81 3.85
1dp5B00 76.54 CytoplasmProtease A inhibitor 3Saccharomyces cerevisiaeVacuolar protein catabolic processProtein binding 1.20.5.140 31 3 45 1.26 2.76
1xrdA01 76.35 Light-harvesting complex 1 alpha chainRhodospirillum rubrumLight-harvesting protein B-870 alpha chain 1.20.5.890 43 4 58 2.58 4.39
1t6aA01 75.87 Geobacillus stearothermophilusRbstp2229 protein 1.20.5.850 43 9 41 0.76 1.85
2hr3A01 74.84 Probable transcriptional regulatorPseudomonas aeruginosa 1.20.5.420 30 10 44 1.45 3.29
2qjyC01 74.31 Oxidative phosphorylationMetabolic pathwaysRhodobacter sphaeroidesUbiquinol-cytochrome c reductase iron-sulfur subunitUbiquinol-cytochrome c reductase iron-sulfur subunit [EC:1.10.2.2] 1.20.5.510 33 0 48 2.16 4.45
1a2xB00 73.43 Troponin I, fast skeletal muscleTroponin T bindingOryctolagus cuniculus 1.20.5.420 31 12 45 2.21 4.85
1fxkC00 72.13 Methanothermobacter thermautotrophicus str. Delta HPrefoldin subunit alphaPrefoldin alpha subunit 1.10.287.370 133 5 36 1.52 4.13
1fdoA05 72.06 Methane metabolismMetabolic pathwaysGlyoxylate and dicarboxylate metabolismFormate dehydrogenase HFormate dehydrogenase, alpha subunit [EC:1.2.1.2] 1.20.5.460 27 7 39 1.70 4.28
1kmiZ01 71.14 Bacterial chemotaxisChemotaxis protein cheZProtein bindingChemotaxis protein CheZEscherichia coli K-12 1.20.5.590 30 13 32 0.48 1.48
2oarE02 70.49 Large conductance mechanosensitive channel, MscL familyLarge-conductance mechanosensitive channelMycobacterium tuberculosis H37Ra 1.20.5.220 22 4 32 1.49 4.61
2p1jA02 69.09 Thermotoga maritimaPyrimidine metabolismDNA replicationPurine metabolismMetabolic pathways 1.20.5.140 26 15 30 0.82 2.66
1be3K00 68.71 Cardiac muscle contractionCytochrome b-c1 complex subunit 10Oxidative phosphorylationParkinson's diseaseAlzheimer's disease 1.20.5.220 22 0 32 1.06 3.28
3g67A00 68.70 Thermotoga maritimaMethyl-accepting chemotaxis protein, putative 1.10.287.950 213 16 31 1.36 4.26
1nafA01 68.08 ADP-ribosylation factor-binding protein GGA1Homo sapiensProtein bindingIntracellular protein transport 1.20.5.170 36 2 33 1.62 4.79
2pp6A01 66.69 Salmonella enterica subsp. enterica serovar TyphimuriumGifsy-2 prophage ATP-binding sugar transporter-like protein 1.20.5.110 21 4 30 0.93 3.01
2oarA02 65.78 Large conductance mechanosensitive channel, MscL familyLarge-conductance mechanosensitive channelMycobacterium tuberculosis H37Ra 1.20.5.220 17 0 25 0.40 1.60
2p1jB02 65.57 Thermotoga maritimaPyrimidine metabolismDNA replicationPurine metabolismMetabolic pathways 1.20.5.140 26 15 25 0.26 1.04
1d66B02 59.61 Regulatory protein GAL4NucleusSequence-specific DNA binding transcription factor activityTranscription activator activityPositive regulation of transcription by galactose 1.20.5.640 15 6 22 0.64 2.90
1mkmA02 56.91 Thermotoga maritimaTranscriptional regulator, IclR family 1.20.5.640 14 0 20 0.64 3.11
3clqB01 56.67 Enterococcus faecalisPutative uncharacterized protein 1.20.5.220 24 8 20 0.68 3.30
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Displaying entries 1 to 71 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1urqC00
RRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKDLGK
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1urqC00
GSHMRNELEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKDLGK
BLAST against CATH

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Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 18:38

Assigning to "1.20.5.110" based on similarity with "1n7sC00" (NWSI: 97.4683544303797, NWO: 98.75, SPS: 90.85, SPO: 86, RMSD: 0.99)

Flow stage update by auto on 28 Apr 2006 17:50

NW result present for Domain "1urqC00"

Flow stage update by auto on 28 Apr 2006 17:44

All required files are present for Domain "1urqC00"

Flow stage update by auto on 27 Apr 2006 17:31

Beginning processing for Domain "1urqC00"

Insertion by auto on 09 Mar 2006 00:55

Final ChopClose added based on similarity with "1sfcC" [LEE: 0, LME: 0, MR: 9, LG: 9, SS: 91.76, SI: 96.25, SO: 96.3855421686747]