CATH Domain: 1upsA02 XML data for domain: 1upsA02

Molscript image for 1upsA02
1upsA02
PDB coordinates for domain 1upsA02

PDB 1ups, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.80 Trefoil
2.80.10 Trefoil (Acidic Fibroblast Growth Factor, subunit A)
2.80.10.50 Gene3D
2.80.10.50.16
2.80.10.50.16.1
2.80.10.50.16.1.1
2.80.10.50.16.1.1.1
2.80.10.50.16.1.1.1.1

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Segment boundaries for domain 1upsA02

Chopping figure for domain 1upsA02
DomainStart PDB ResidueStop PDB Residue
1upsA01 17 285
1upsA02 286 420

Structural Neighbourhood (20 entries)

There are 20 matching structural neighberhood comparisons for CATH ID 2.80.10.50.16.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 20 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2fdbN00 86.10 Type 2 fibroblast growth factor receptor bindingMesonephros developmentPositive regulation of cell proliferationType 1 fibroblast growth factor receptor bindingExtracellular space 2.80.10.50 148 13 85 2.30 2.68
1dfcA03 85.44 FascinActin cytoskeletonActin filament bundle assemblyHomo sapiensCell proliferation 2.80.10.50 123 17 90 2.02 2.24
1jlxA02 85.25 Amaranthus caudatusAgglutinin 2.80.10.50 140 12 90 2.43 2.68
1dfcA01 85.10 FascinActin cytoskeletonActin filament bundle assemblyHomo sapiensCell proliferation 2.80.10.50 122 9 87 1.85 2.12
1dfcA02 85.09 FascinActin cytoskeletonActin filament bundle assemblyHomo sapiensCell proliferation 2.80.10.50 123 8 90 2.30 2.53
1n4kA01 84.96 MicrosomeVoluntary musculoskeletal movementNucleolusPhosphoinositide bindingSarcoplasmic reticulum 2.80.10.50 141 15 86 2.64 3.05
1m2tB02 84.95 Beta-galactoside-specific lectin 1Viscum album 2.80.10.50 124 8 88 2.19 2.47
1w3fA01 84.35 Laetiporus sulphureusHemolytic lectin LSLa 2.80.10.50 147 9 88 2.54 2.87
1ihkA00 83.54 Pathways in cancerMelanomaMAPK signaling pathwayRegulation of actin cytoskeletonGlia-activating factor 2.80.10.50 157 12 80 2.37 2.95
1wd3A02 83.08 Alpha-L-arabinofuranosidase BAspergillus awamori 2.80.10.50 162 11 78 2.53 3.23
1jlxA01 82.56 Amaranthus caudatusAgglutinin 2.80.10.50 159 11 82 2.64 3.20
1dfcA04 82.51 FascinActin cytoskeletonActin filament bundle assemblyHomo sapiensCell proliferation 2.80.10.50 107 14 79 1.93 2.42
1sr4A00 82.40 Haemophilus ducreyiCytolethal distending toxin subunit ACytolethal distending toxin subunit A 2.80.10.50 167 10 77 2.58 3.34
1t9fA00 81.19 Caenorhabditis elegansPutative uncharacterized protein 2.80.10.50 178 12 71 2.35 3.29
1sr4C00 80.36 Cytolethal distending toxin protein CCytolethal distending toxin subunit CHaemophilus ducreyi 2.80.10.50 154 9 75 3.36 4.42
1hcdA00 79.51 Membrane fractionPlasma membraneActin filament bindingHisactophilin-1Cytosol 2.80.10.50 118 14 87 2.73 3.10
3iagC02 78.83 Transcription factor bindingHeart developmentRegulation of timing of cell differentiationDefense response to bacteriumNotch signaling pathway 2.80.10.50 155 13 65 2.36 3.59
2qn4A00 78.50 Oryza sativa Japonica GroupAlpha-amylase inhibitor activityAlpha-amylase/subtilisin inhibitorSerine-type endopeptidase inhibitor activity 2.80.10.50 159 7 71 2.50 3.49
1xzzA00 76.72 MicrosomeNucleolusPhosphoinositide bindingVoluntary musculoskeletal movementSarcoplasmic reticulum 2.80.10.50 216 9 57 2.39 4.16
1avwB00 76.54 Glycine maxTrypsin inhibitor A 2.80.10.50 171 9 73 3.68 4.99
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Displaying entries 1 to 20 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1upsA02
SLNNYLIRNRQTGKFLYIEENNDKVSYGDITLKNEKNAKWSKEYRDGYTLLKNNETGEYLNIENQTGYIEHGKVPKTWWS
AQWSEVPVDGYTRFVNRWKPNMSIHTESYEGVLQYGNVPNTYWTSQWQLIPVE
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1upsA02
SESLNNYLIRNRQTGKFLYIEENNDKVSYGDITLKNEKNAKWSKEYRDGYTLLKNNETGEYLNIENQTGYIEHGKVPKTW
WSAQWSEVPVDGYTRFVNRWKPNMSIHTESYEGVLQYGNVPNTYWTSQWQLIPVE
BLAST against CATH

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Domain History Events (3)

Insertion by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Flow stage update by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Insertion by auto on 06 Mar 2006 00:00

Cut based on decision in database "DomChop" on "cathdb"