CATH Domain: 1uokA03 XML data for domain: 1uokA03

Molscript image for 1uokA03
1uokA03
PDB coordinates for domain 1uokA03

PDB 1uok, Chain A, Domain 3

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.60 Sandwich
2.60.40 Immunoglobulin-like
2.60.40.1180 Golgi alpha-mannosidase II Gene3D
2.60.40.1180.23
2.60.40.1180.23.1
2.60.40.1180.23.1.1
2.60.40.1180.23.1.1.1
2.60.40.1180.23.1.1.1.1

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Segment boundaries for domain 1uokA03

Chopping figure for domain 1uokA03
DomainStart PDB ResidueStop PDB Residue
1uokA01 1 104
1uokA01 175 480
1uokA02 105 174
1uokA03 481 558

Structural Neighbourhood (9 entries)

There are 9 matching structural neighberhood comparisons for CATH ID 2.60.40.1180.23.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 9 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1gjwA02 83.98 Thermotoga maritimaMaltodextrin glycosyltransferase 2.60.40.1180 68 11 80 2.94 3.64
1ea9C04 83.03 Bacillus sp.Cyclomaltodextrinase 2.60.40.1180 81 10 92 2.75 2.97
1iv8A05 82.92 Sulfolobus acidocaldariusGlycosyltrehalose-producing enzyme 2.60.40.1180 66 12 83 2.71 3.25
1ua7A02 82.85 Starch and sucrose metabolismBacillus subtilisAlpha-amylaseAlpha-amylase [EC:3.2.1.1]Metabolic pathways 2.60.40.1180 78 12 92 2.71 2.94
1lwjA03 81.57 4-alpha-glucanotransferase [EC:2.4.1.25]Thermotoga maritimaStarch and sucrose metabolism4-alpha-glucanotransferaseMetabolic pathways 2.60.40.1180 50 22 62 1.35 2.15
1eh9A02 80.80 Sulfolobus solfataricusMalto-oligosyltrehalose trehalohydrolase 2.60.40.1180 62 9 76 2.90 3.77
1ht6A02 79.46 Alpha-amylase type A isozymeHordeum vulgare 2.60.40.1180 57 7 66 2.59 3.88
1gcyA02 78.80 Pseudomonas stutzeriGlucan 1,4-alpha-maltotetraohydrolase 2.60.40.1180 56 10 71 3.31 4.61
1f1sA03 76.77 Hyaluronate lyaseStreptococcus agalactiae serogroup III 2.60.220.10 82 1 62 2.14 3.44
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Displaying entries 1 to 9 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1uokA03
SYDLILENNPSIFAYVRTYGVEKLLVIANFTAEECIFELPEDISYSEVELLIHNYDVENGPIENITLRPYEAMVFKLK
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1uokA03
SYDLILENNPSIFAYVRTYGVEKLLVIANFTAEECIFELPEDISYSEVELLIHNYDVENGPIENITLRPYEAMVFKLK
BLAST against CATH

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Domain History Events (8)

Update comment by auto on 16 Oct 2007 19:44

Around September/October 2007, this domain was renamed from "1uok003" to "1uokA03" as part of the work to deal with the remediation of the PDB (see http://remediation.wwpdb.org). Please see ticket:207 or wiki:Remediation on the CATH Trac system for more details.

Domain assigned by lewis on 09 Jan 2007 13:16

Assigning domain 1uok003 to 2.60.40.1180 (as agreed with the CATH update team) after the chain has been rechopped. The reason is that the domain is very similar to the old domain 1uok003 (from the previous chopping at "Sun Mar 5 17:48:46 2006") which was in 2.60.40.1180 at the time the chain was unchopped.

Flow stage update by auto on 22 Dec 2006 07:38

No satisfactory AssignClose result found.

Flow stage update by auto on 22 Dec 2006 07:36

No in_process hits for Domain "1uok003" ready to be processed

Flow stage update by auto on 22 Dec 2006 07:36

NW result present for Domain "1uok003"

Flow stage update by auto on 18 Dec 2006 15:29

All required files are present for Domain "1uok003"

Flow stage update by auto on 18 Dec 2006 15:29

Beginning processing for Domain "1uok003"

Insertion by cuff on 18 Dec 2006 11:41

nice choppings