CATH Domain: 1umkA02 XML data for domain: 1umkA02

Molscript image for 1umkA02
1umkA02
PDB coordinates for domain 1umkA02

PDB 1umk, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.80 Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module Gene3D
3.40.50.80.4
3.40.50.80.4.1
3.40.50.80.4.1.1
3.40.50.80.4.1.1.1
3.40.50.80.4.1.1.1.1

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Segment boundaries for domain 1umkA02

Chopping figure for domain 1umkA02
DomainStart PDB ResidueStop PDB Residue
1umkA01 31 145
1umkA02 146 299

Structural Neighbourhood (17 entries)

There are 17 matching structural neighberhood comparisons for CATH ID 3.40.50.80.4.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 17 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1krhA03 85.16 Benzoate 1,2-dioxygenase electron transfer componentAcinetobacter sp. ADP1 3.40.50.80 134 25 84 2.33 2.76
1qfjA02 84.44 Porphyrin and chlorophyll metabolismAquacobalamin reductase / NAD(P)H-flavin reductase [EC:1.16.1.3 1.5.1.29]NAD(P)H-flavin reductaseEscherichia coli K-12 3.40.50.80 135 16 83 2.28 2.72
2rc5A02 83.68 Leptospira interrogansFerredoxin--NADP reductase 3.40.50.80 161 14 85 3.70 4.35
1cqxA03 83.30 Nitric oxide dioxygenase [EC:1.14.12.17]Ralstonia eutropha H16Flavohemoprotein 3.40.50.80 142 15 82 2.23 2.70
2piaA02 82.78 Burkholderia cepaciaPhthalate dioxygenase reductase 3.40.50.80 121 17 76 3.41 4.45
1f20A01 82.67 Response to heatNegative regulation of insulin secretionSynapseAmino acid bindingNuclear membrane 3.40.50.80 163 16 79 2.76 3.49
1ep3B02 82.34 Lactococcus lactis subsp. cremoris MG1363Dihydroorotate dehydrogenase electron transfer subunitProtein bindingDihydroorotate dehydrogenase electron transfer subunit 3.40.50.80 117 19 74 2.46 3.29
2r6hA02 82.12 Na+-transporting NADH:ubiquinone oxidoreductase subunit F [EC:1.6.5.-]Porphyromonas gingivalisNADH:ubiquinone oxidoreductase, Na translocating, F subunit 3.40.50.80 114 19 71 2.41 3.37
1ja1A04 82.08 Rattus norvegicusNitric oxide catabolic processMicrosomeCellular response to peptide hormone stimulusNADPH-ferrihemoprotein reductase [EC:1.6.2.4] 3.40.50.80 158 12 81 2.97 3.67
2aefA01 77.45 Methanothermobacter thermautotrophicus str. Delta HCalcium-gated potassium channel mthK 3.40.50.720 115 6 60 2.41 3.99
1pjqA01 75.88 Porphyrin and chlorophyll metabolismSalmonella enterica subsp. enterica serovar TyphimuriumSiroheme synthaseUroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]Metabolic pathways 3.40.50.720 112 10 64 3.01 4.68
2hmtA00 75.52 Trk system potassium uptake protein TrkABacillus subtilisKtr system potassium uptake protein A 3.40.50.720 139 5 61 2.90 4.70
1lssA00 75.41 Trk system potassium uptake protein TrkATrk system potassium uptake protein trkA homologMethanocaldococcus jannaschii 3.40.50.720 132 2 62 3.08 4.94
2c82A01 73.24 Terpenoid backbone biosynthesisMetabolic pathways1-deoxy-D-xylulose 5-phosphate reductoisomerase1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]Mycobacterium tuberculosis 3.40.50.720 141 11 71 3.50 4.90
3i28A01 72.90 PeroxisomeSoluble epoxide hydrolase [EC:3.3.2.10]Arachidonic acid metabolismEpoxide hydrolase activityEpoxide hydrolase 2 3.40.50.1000 135 12 65 3.14 4.79
3eagA01 72.04 UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.-]Neisseria meningitidis serogroup BUDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 3.40.50.720 88 10 57 2.58 4.51
1q0qA01 71.09 Terpenoid backbone biosynthesisMetabolic pathways1-deoxy-D-xylulose 5-phosphate reductoisomerase1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]1-deoxy-D-xylulose-5-phosphate reductoisomerase activity 3.40.50.720 150 6 70 3.50 4.94
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Displaying entries 1 to 17 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1umkA02
GLLVYQGKGKFAIRPDKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQTEKDILLRPELEELR
NKHSARFKLWYTLDRAPEAWDYGQGFVNEEMIRDHLPPPEEEPLVLMCGPPPMIQYACLPNLDHVGHPTERCFV
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1umkA02
GLLVYQGKGKFAIRPDKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQTEKDILLRPELEELR
NKHSARFKLWYTLDRAPEAWDYGQGFVNEEMIRDHLPPPEEEPLVLMCGPPPMIQYACLPNLDHVGHPTERCFV
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:12

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:12

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:48

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"