CATH Domain: 1umkA01 XML data for domain: 1umkA01

Molscript image for 1umkA01
1umkA01
PDB coordinates for domain 1umkA01

PDB 1umk, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.30 Elongation Factor Tu (Ef-tu); domain 3
2.40.30.10 Translation factors Gene3D
2.40.30.10.4
2.40.30.10.4.1
2.40.30.10.4.1.1
2.40.30.10.4.1.1.1
2.40.30.10.4.1.1.1.1

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Segment boundaries for domain 1umkA01

Chopping figure for domain 1umkA01
DomainStart PDB ResidueStop PDB Residue
1umkA01 31 145
1umkA02 146 299

Structural Neighbourhood (15 entries)

There are 15 matching structural neighberhood comparisons for CATH ID 2.40.30.10.4.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 15 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1f20A03 84.66 Response to heatNegative regulation of insulin secretionSynapseAmino acid bindingNitric oxide biosynthetic process 2.40.30.10 113 18 87 3.25 3.70
1ddgA01 84.32 Sulfur metabolismMetabolic pathwaysSulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2]Sulfite reductase [NADPH] flavoprotein alpha-componentProtein binding 2.40.30.10 114 16 90 2.95 3.26
2bmwA01 83.75 Nostoc sp. PCC 7119Flavin adenine dinucleotide bindingFerredoxin--NADP reductaseProtein bindingFerredoxin-NADP+ reductase activity 2.40.30.10 128 19 86 3.24 3.74
2piaA01 83.67 Burkholderia cepaciaPhthalate dioxygenase reductase 2.40.30.10 104 17 87 3.84 4.37
2qdxA01 83.29 Pseudomonas aeruginosaFerredoxin--NADP+ reductase [EC:1.18.1.2]Ferredoxin--NADP+ reductase 2.40.30.10 95 15 81 2.14 2.62
1krhA02 83.17 Benzoate 1,2-dioxygenase electron transfer componentAcinetobacter sp. ADP1 2.40.30.10 97 24 83 2.69 3.22
1ja1A02 82.95 Rattus norvegicusNitric oxide catabolic processMicrosomeCellular response to peptide hormone stimulusNADPH-ferrihemoprotein reductase [EC:1.6.2.4] 2.40.30.10 122 8 88 3.96 4.47
2gpjA01 82.66 Siderophore-interacting proteinShewanella putrefaciens CN-32 2.40.30.10 98 18 83 2.89 3.46
1qfjA01 82.40 Porphyrin and chlorophyll metabolismAquacobalamin reductase / NAD(P)H-flavin reductase [EC:1.16.1.3 1.5.1.29]NAD(P)H-flavin reductaseEscherichia coli K-12 2.40.30.10 91 18 73 2.15 2.91
2r6hA01 82.32 Na+-transporting NADH:ubiquinone oxidoreductase subunit F [EC:1.6.5.-]Porphyromonas gingivalisNADH:ubiquinone oxidoreductase, Na translocating, F subunit 2.40.30.10 138 14 74 2.43 3.26
1ep3B01 81.24 Lactococcus lactis subsp. cremoris MG1363Dihydroorotate dehydrogenase electron transfer subunitProtein bindingDihydroorotate dehydrogenase electron transfer subunit 2.40.30.10 99 12 84 2.80 3.32
2rc5B01 81.11 Leptospira interrogansFerredoxin--NADP reductase 2.40.30.10 140 20 79 3.60 4.54
1i8dA01 80.10 Riboflavin metabolismMetabolic pathwaysRiboflavin synthase activityRiboflavin synthase alpha chain [EC:2.5.1.9]Riboflavin synthase alpha chain 2.40.30.20 89 13 76 3.70 4.84
1kzlA02 79.05 NucleusCytosolSchizosaccharomyces pombeMetabolic pathwaysRiboflavin metabolism 2.40.30.20 101 9 73 2.86 3.87
1i8dC02 76.59 Riboflavin metabolismMetabolic pathwaysRiboflavin synthase activityRiboflavin synthase alpha chain [EC:2.5.1.9]Riboflavin synthase alpha chain 2.40.30.20 88 7 65 2.86 4.39
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Displaying entries 1 to 15 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1umkA01
PAITLESPDIKYPLRLIDREIISHDTRRFRFALPSPQHILGLPVGQHIYLSARIDGNLVVRPYTPISSDDDKGFVDLVIK
VYFKDTHPKFPAGGKMSQYLESMQIGDTIEFRGPS
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1umkA01
PAITLESPDIKYPLRLIDREIISHDTRRFRFALPSPQHILGLPVGQHIYLSARIDGNLVVRPYTPISSDDDKGFVDLVIK
VYFKDTHPKFPAGGKMSQYLESMQIGDTIEFRGPS
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:29

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:29

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:48

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"